Neuroblastoma cell growth and survival promoted by DNMT3B and its inhibition demonstrates anti-tumor effects

Kazuya Izumi1,2, Hiromasa Aoki1, Kohki Toriuchi1

  • 1Department of Pathobiology, Nagoya City University Graduate School of Pharmaceutical Sciences, Nagoya, Aichi, Japan.

Pediatric Research
|April 30, 2026
PubMed
Abstract

Insights

Selective inhibition of DNA methyltransferase 3B (DNMT3B) shows promise for treating neuroblastoma. Targeting DNMT3B suppresses tumor growth and enhances apoptosis, offering a potential new therapeutic strategy for this childhood cancer.

Area of Science:

  • Oncology
  • Epigenetics
  • Molecular Biology

Background:

  • Neuroblastoma is a common childhood cancer.
  • DNA methylation is a key epigenetic mechanism in cancer development.
  • Current DNA methyltransferase inhibitors have limited efficacy and high toxicity for neuroblastoma.

Purpose of the Study:

  • To investigate the role of DNA methyltransferase 3B (DNMT3B) in neuroblastoma progression.
  • To evaluate the therapeutic potential of selective DNMT3B inhibition in neuroblastoma.

Main Methods:

  • Analyzed DNMT3B expression in neuroblastoma patient data.
  • Assessed DNMT3B function in neuroblastoma cell lines and xenograft models.
  • Utilized RNA sequencing to analyze gene expression changes after DNMT3B knockdown.

Main Results:

  • Elevated DNMT3B expression correlates with advanced neuroblastoma and poor prognosis.
  • DNMT3B knockdown induced DNA demethylation, increased apoptosis-related gene expression, and inhibited tumor growth in vitro and in vivo.
  • The DNMT3B inhibitor nanaomycin A demonstrated anti-tumor effects in a neuroblastoma xenograft model.

Conclusions:

  • DNMT3B plays a tumor-promoting role in neuroblastoma.
  • Selective inhibition of DNMT3B is a potential therapeutic strategy for neuroblastoma.
  • Nanaomycin A shows promise as a DNMT3B-targeted therapy for neuroblastoma.