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Updated: May 2, 2026

Multiscale Sampling of a Heterogeneous Water/Metal Catalyst Interface using Density Functional Theory and Force-Field Molecular Dynamics
Published on: April 12, 2019
An interpretable machine learning framework for prediction of adsorption energies and generative design of active
Matthew S Johnson1, Richard H West2, Judit Zádor1
1Combustion Research Facility, Sandia National Laboratories, Livermore, California 94550, USA. jzador@sandia.gov.
Abstract:
We present a highly interpretable and efficient machine learning framework for predictive and generative modeling of adsorption energies on surfaces using subgraph isomorphic decision trees (SIDTs). Extracting graph representations of 344 756 relaxed geometries and their associated adsorption energies from the OC20 database, we used them to train a 24 777-node SIDT that achieves 0.36 eV MDAE, 0.54 eV MAE, and 0.82 eV RMSE. We then developed and implemented novel techniques to use SIDTs as generative models enabling efficient catalyst optimization for arbitrary objective functions and constraints as a function of the adsorption energies and prediction uncertainties of multiple adsorbates and the catalyst structure itself. In particular, our SIDT provides substructure representations of the subdistributions of adsorption energy, rather than mere samples from the subdistributions, as is commonly done in traditional generative modeling. We show how this can be exploited for efficient and interpretable catalyst active site design in two examples. For the ammonia decomposition reaction sequence, we show that we are able to use our generative techniques to minimize the overall barrier height of the sequence generating catalyst substructures predicted to decrease the overall barrier from 2.7 eV on Pt(111) to 0.4 eV. We also discuss how we can exploit the accurate SIDT uncertainties and the interpretability of the SIDT to identify regions of chemical space that are in need of improved coverage and might be improved using active-learning schemes.
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