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Updated: May 2, 2026

X-Ray Crystallography to Study the Oligomeric State Transition of the Thermotoga maritima M42 Aminopeptidase TmPep1050
Published on: May 13, 2020
Consistent GMTKN55 and molecular-crystal accuracy using minimally empirical DFT with XDM(Z) dispersion
Kyle R Bryenton1,2, Erin R Johnson1,2,3
1Department of Physics and Atmospheric Science, Dalhousie University, 6310 Coburg Road, Halifax, Nova Scotia, B3H 4R2, Canada.
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Density-functional theory (DFT) has become the workhorse of modern computational chemistry, with dispersion corrections such as the exchange-hole dipole moment (XDM) model playing a key role in high-accuracy modelling of large-scale systems. All previous production implementations of XDM have used the two-parameter Becke-Johnson damping function based on atomic radii. Here, we introduce and implement a new XDM variant that uses a one-parameter damping function based on atomic numbers, recently proposed by Becke. Both this new Z damping and the canonical BJ-damping variants of XDM are benchmarked on the comprehensive GMTKN55 database using minimally empirical generalised-gradient-approximation, global hybrid, and range-separated hybrid functionals. This marks the first time that the XDM (and many-body dispersion, MBD) corrections have been tested on the GMTKN55 set. Using the new WTMAD-4 metric, an outlier analysis is performed for all new data, as well as for top-ranking functionals from the literature at each rung, providing insight into both performance and consistency across the dataset. We also extended our analysis to the DM21 and Skala machine-learned functionals that have garnered recent attention. To test Z damping's transferability to the solid state, four benchmarks involving molecular crystals are also considered. Across these molecular and solid-state benchmarks, the revPBE0 and B86bPBE0 hybrid functionals, paired with the Z-damped XDM variant, show excellent performance.
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