Histology-Derived Signatures Predict Recurrence Risk and Chemotherapy Benefit in Randomized Trials of Early Breast
Frederick M Howard1, Anran Li1, Sara Kochanny1
1Department of Medicine, University of Chicago, Chicago, IL, USA.
Summary
Histology-derived gene signatures from routine slides can predict early breast cancer recurrence and chemotherapy benefit. These signatures improve risk stratification, identifying low-risk groups with a 2%-10% chance of distant recurrence.
Area of Science:
- Oncology
- Genomics
- Digital Pathology
Background:
- Routine hematoxylin and eosin (H&E) slides offer a rich source of information.
- Histology-derived gene-expression signatures can potentially enhance prognostic and predictive capabilities in cancer research.
Purpose of the Study:
- To determine if gene-expression signatures derived from H&E slides are prognostic for recurrence and predictive of chemotherapy benefit in early breast cancer patients.
Main Methods:
- A multi-cohort study analyzed whole-slide images from over 7,000 patients across four cohorts.
- 61 histology-derived signatures were generated per patient using a standardized pipeline.
- Prognostic performance was assessed using distant recurrence-free interval (DRFI) and distant recurrence-free survival (DRFS); predictive value was evaluated via signature-treatment interactions.
Main Results:
- The top histology signature demonstrated strong prognostic performance across validation cohorts (C-index 0.60-0.70) for 5-year DRFI.
- Significant predictive signals for chemotherapy benefit were observed, particularly for taxane and dose-dense chemotherapy.
- Combined clinical-histology models improved risk stratification, identifying low-risk groups with a 2%-10% risk of distant recurrence or breast cancer death.
Conclusions:
- Histology-derived signatures from H&E images are broadly prognostic for early breast cancer recurrence.
- These signatures show potential in predicting chemotherapy benefit, outperforming traditional clinical factors.
- Integrated clinical and histological data enhance risk stratification for personalized treatment strategies.

