Related Experiment Video
Updated: May 8, 2026

Combining X-Ray Crystallography with Small Angle X-Ray Scattering to Model Unstructured Regions of Nsa1 from S. Cerevisiae
Published on: January 10, 2018
Siamese foundation models for crystal structure prediction
Liming Wu1,2,3, Wenbing Huang4,5,6, Rui Jiao7,8
1Gaoling School of Artificial Intelligence, Renmin University of China, Beijing, China.
We developed Diffusion-based crystAl Omni (DAO), a new AI framework for predicting crystal structures. DAO significantly accelerates materials discovery by accurately generating complex structures faster than traditional methods.
Area of Science:
- Materials Science
- Computational Chemistry
- Artificial Intelligence in Materials Discovery
Background:
- Predicting crystal structures from chemical composition is crucial for materials discovery but challenging due to complex 3D geometries.
- Existing computational methods can be slow and struggle with complex or novel structures.
Purpose of the Study:
- To introduce Diffusion-based crystAl Omni (DAO), a novel pretrain-finetune framework for enhanced crystal structure prediction.
- To leverage Siamese foundation models for structure generation and energy prediction to improve accuracy and speed.
Main Methods:
- Developed DAO, integrating a structure generator and an energy predictor within a Siamese network framework.
- Pretrained the generator using a two-stage pipeline on a large dataset, utilizing the predictor for configuration relaxation and guided sampling.
- Validated the framework on established benchmarks and real-world superconductor materials.
Main Results:
- Pretraining significantly improved performance across various backbone architectures on standard benchmarks.
- Synergistic interaction between the generator and predictor mutually enhanced both model components.
- Achieved a 100% match rate and low atomic-position error for Cr6Os2, outperforming DFT-based methods by over 2000x per iteration.
Conclusions:
- DAO demonstrates superior performance and efficiency in crystal structure prediction compared to conventional computational approaches.
- The framework shows significant potential for accelerating the discovery of novel materials, including complex superconductors.
- The integrated generator-predictor approach offers a powerful new paradigm for computational materials science.
Related Concept Videos
Determination of Crystal Structures
X-ray Crystallography
Diffraction
Diffraction is the change in the direction of travel experienced by an electromagnetic wave when it encounters a physical barrier whose dimensions are comparable to those of the wavelength of the light. X-rays are electromagnetic radiation with wavelengths about as long as the distance between neighboring...
Symmetry Elements in a Crystal
Crystallographic Point Groups
Crystal Field Theory - Tetrahedral and Square Planar Complexes
Crystal field theory (CFT) is applicable to molecules in geometries other than octahedral. In octahedral complexes, the lobes of the dx2−y2 and dz2 orbitals point directly at the ligands. For tetrahedral complexes, the d orbitals remain in place, but with only four ligands located between the axes. None of the orbitals points directly at the tetrahedral ligands. However, the dx2−y2 and dz2 orbitals (along the Cartesian axes) overlap with the ligands less than the dxy,...
Crystal Field Theory - Octahedral Complexes
To explain the observed behavior of transition metal complexes (such as colors), a model involving electrostatic interactions between the electrons from the ligands and the electrons in the unhybridized d orbitals of the central metal atom has been developed. This electrostatic model is crystal field theory (CFT). It helps to understand, interpret, and predict the colors, magnetic behavior, and some structures of coordination compounds of transition metals.
CFT focuses on...

