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Updated: May 15, 2026

An Integrated Approach for Microprotein Identification and Sequence Analysis
Published on: July 12, 2022
Microproteins at the Frontiers of Biology and Medicine
Andrea Rocha1, Alan Saghatelian1
1Clayton Foundation Laboratories for Peptide Biology, Salk Institute for Biological Studies, La Jolla, California, USA;
Abstract:
Small proteins, known as microproteins, typically consisting of fewer than 150 amino acids, have recently emerged as a previously unrecognized class of functional genes in biology. Advances in ribosome profiling, proteogenomics, and genome-wide functional screens have revealed that thousands of small open reading frames are actively translated, producing microproteins, some of which regulate essential processes in metabolism, immunity, cancer, and neurodegeneration. These discoveries have challenged long-held assumptions that gene function is confined to large, conserved proteins and have underscored microproteins as critical modulators. Dysregulation or mutation of small open reading frame-encoding microproteins contributes to a diverse range of biology, and in some cases links the noncanonical proteome to pathophysiological biology. In this review, we summarize current knowledge of microprotein discovery and function, describe key examples connecting microproteins to human disease, and discuss the opportunities and challenges that define this rapidly evolving field.
Insights
Microproteins, small functional genes under 150 amino acids, are actively translated and regulate key biological processes. Their dysregulation is linked to diseases like cancer and neurodegeneration, revealing a new layer of genetic function.
Area of Science:
- Molecular Biology
- Genetics
- Biochemistry
Background:
- Microproteins, defined as proteins with fewer than 150 amino acids, represent a newly recognized class of functional genes.
- Historically, gene function was assumed to be limited to large, conserved proteins, a notion challenged by microprotein discoveries.
Purpose of the Study:
- To review the current understanding of microprotein discovery and their biological functions.
- To highlight key examples of microproteins implicated in human diseases.
- To discuss the future opportunities and challenges in microprotein research.
Main Methods:
- Advances in ribosome profiling and proteogenomics have enabled the identification of actively translated small open reading frames.
- Genome-wide functional screens are utilized to assess the biological roles of microproteins.
- Literature review and synthesis of existing research on microprotein function and disease association.
Main Results:
- Thousands of small open reading frames are actively translated, producing functional microproteins.
- Microproteins regulate critical cellular processes including metabolism, immunity, cancer development, and neurodegeneration.
- Dysregulation or mutations in microprotein-encoding genes are linked to various pathophysiological conditions.
Conclusions:
- Microproteins are critical modulators of essential biological processes and represent a significant, previously unrecognized component of the functional proteome.
- The link between the noncanonical proteome (microproteins) and human disease is increasingly evident.
- The field of microprotein research is rapidly evolving, presenting new avenues for understanding health and disease.
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