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Updated: May 16, 2026

On-Site Sampling and Extraction of Brain Tumors for Metabolomics and Lipidomics Analysis
Published on: May 31, 2020
Metabolic and molecular correlates of medulloblastoma: Identification of molecular groups using in vivo 1H-MR
Benita Tamrazi1,2, Alexander Markowitz2,3, Ashley S Margol2,4
1Department of Radiology, Children's Hospital Los Angeles, Los Angeles, California, USA.
Background:
Accurate molecular classification of medulloblastoma is critical for prognosis and treatment planning, but current methods rely on surgical tissue sampling and molecular profiling. This study evaluated whether in vivo proton MR spectroscopy (¹H-MRS) can provide noninvasive metabolic markers to support presurgical molecular group stratification.
Methods:
In this single-center retrospective study, pretreatment ¹H-MRS data were analyzed from 95 pediatric patients with medulloblastoma (median age 7.4 years; 56 male). Single-voxel point-resolved spectroscopy (TE = 35 ms, TR = 1.5-2.0 s) were acquired during routine clinical MRI, adding approximately 5 minutes of scan time. Absolute metabolite concentrations and selected ratios were quantified using automated spectral fitting. Metabolic profiles were compared across molecular groups (group 3, n = 22; group 4, n = 35; sonic hedgehog [SHH], n = 26; wingless [WNT], n = 12) and assessed for qualitative concordance with prior ex vivo high-resolution HR-MAS NMR findings. Group differences were tested using Kruskal-Wallis with Dunn post hoc correction.
Results:
Significant metabolic differences were observed across molecular groups, with strong group effects for taurine, creatine, choline, glutamate, and γ-aminobutyric acid (GABA) (all P < .0015). Taurine was elevated in group 3 and group 4 relative to SHH (log₂FC = 1.77 and 1.40, adjusted P < 4 × 10⁻⁵). SHH tumors exhibited lower creatine compared with group 3, group 4, and WNT (adjusted P < .05). Glutamate was higher in SHH than in WNT, while WNT tumors showed increased choline and GABA relative to other groups (adjusted P < .05). In vivo patterns were qualitatively concordant with ex vivo NMR findings.
Conclusions:
In vivo ¹H-MRS is a widely available, clinically feasible imaging biomarker that complements existing diagnostics and supports presurgical stratification of medulloblastoma.
