Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Hybridization of Atomic Orbitals II03:35

Hybridization of Atomic Orbitals II

sp3d and sp3d 2 Hybridization
Hybridization of Atomic Orbitals I03:24

Hybridization of Atomic Orbitals I

The mathematical expression known as the wave function, ψ, contains information about each orbital and the wavelike properties of electrons in an isolated atom. When atoms are bound together in a molecule, the wave functions combine to produce new mathematical descriptions that have different shapes. This process of combining the wave functions for atomic orbitals is called hybridization and is mathematically accomplished by the linear combination of atomic orbitals. The new orbitals that...
Spin–Spin Coupling: Three-Bond Coupling (Vicinal Coupling)01:22

Spin–Spin Coupling: Three-Bond Coupling (Vicinal Coupling)

Vicinal or three-bond coupling is commonly observed between protons attached to adjacent carbons. Here, nuclear spin information is primarily transferred via electron spin interactions between adjacent C‑H bond orbitals. This generally favors the antiparallel arrangement of spins, so 3J values are usually positive.
The extent of coupling depends on the C‑C bond length, the two H‑C‑C angles, any electron-withdrawing substituents, and the dihedral angle between the involved orbitals. The...
IR Spectroscopy: Hooke's Law Approximation of Molecular Vibration01:16

IR Spectroscopy: Hooke's Law Approximation of Molecular Vibration

A covalently bonded heteronuclear diatomic molecule can be modeled as two vibrating masses connected by a spring. The vibrational frequency of the bond can be expressed using an equation derived from Hooke's law, which describes how the force applied to stretch or compress a spring is proportional to the displacement of the spring. In this case, the atoms behave like masses, and the bond acts like a spring.
According to Hooke's law, the vibrational frequency is directly proportional to the...
Valence Bond Theory and Hybridized Orbitals02:38

Valence Bond Theory and Hybridized Orbitals

According to valence bond theory, a covalent bond results when: (1) an orbital on one atom overlaps an orbital on a second atom, and (2) the single electrons in each orbital combine to form an electron pair. The strength of a covalent bond depends on the extent of overlap of the orbitals involved. Maximum overlap is possible when the orbitals overlap on a direct line between the two nuclei.
A σ bond (single bond in a Lewis structure) is a covalent bond in which the electron density is...
NMR Spectroscopy: Spin–Spin Coupling01:08

NMR Spectroscopy: Spin–Spin Coupling

The spin state of an NMR-active nucleus can have a slight effect on its immediate electronic environment. This effect propagates through the intervening bonds and affects the electronic environments of NMR-active nuclei up to three bonds away; occasionally, even farther. This phenomenon is called spin–spin coupling or J-coupling. Coupling interactions are mutual and result in small changes in the absorption frequencies of both nuclei involved. While nuclei of the same element are involved in...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Photochemistry in plasmonic cavities: From perturbative to strong coupling regime.

The Journal of chemical physics·2026
Same author

Capturing coherent pseudorotation through conical intersection in photoionized benzene.

Nature communications·2025
Same author

Correlation-driven ultrafast charge migration in pyrrole derivatives: the influence of the alkyl group.

Physical chemistry chemical physics : PCCP·2025
Same author

Quantum dynamics simulation of exciton-polariton transport.

Nature communications·2025
Same author

Competition between Coherent Ultrafast Energy Redistribution and Photochemistry in the Collective Strong Coupling Regime: The Role of Static Disorder.

The journal of physical chemistry letters·2025
Same author

Enhanced intermolecular coulombic decay due to sulfur heteroatoms in thiophene dimer.

Communications chemistry·2025
Same journal

Nuclear Gradients from Auxiliary-Field Quantum Monte Carlo and Their Applications in ML-Driven Geometry Optimization and Transition State Search.

Journal of chemical theory and computation·2026
Same journal

Correction to "Cluster-in-Molecule Local Correlation Method with an Accurate Distant Pair Correction for Large Systems".

Journal of chemical theory and computation·2026
Same journal

Machine-Learned Force Fields for Lattice Dynamics at Coupled-Cluster Level Accuracy.

Journal of chemical theory and computation·2026
Same journal

Systematic Molecularity-Dependent Entropy Errors in Continuum/RRHO Solution Thermochemistry: Origin and Correction.

Journal of chemical theory and computation·2026
Same journal

After 100 Years of Quantum Mechanics: Toward a Constructive Observation-Centered Perspective.

Journal of chemical theory and computation·2026
Same journal

Sample-Based Quantum Diagonalization Methods for Modeling the Photochemistry of Diazirine and Diazo Compounds.

Journal of chemical theory and computation·2026
See all related articles

Related Experiment Video

Updated: May 20, 2026

Excitonic Hamiltonians for Calculating Optical Absorption Spectra and Optoelectronic Properties of Molecular Aggregates and Solids
08:04

Excitonic Hamiltonians for Calculating Optical Absorption Spectra and Optoelectronic Properties of Molecular Aggregates and Solids

Published on: May 27, 2020

Enhancing Vibronic-Coupling Hamiltonian Parameterization with Machine Learning: The PyVCHAM Tool.

Emilio Rodríguez-Cuenca1, Alexander I Kuleff1, Oriol Vendrell1

  • 1Theoretische Chemie, PCI, Universität Heidelberg, Im Neuenheimer Feld 229, Heidelberg D-69120, Germany.

Journal of Chemical Theory and Computation
|May 18, 2026
PubMed
Summary
This summary is machine-generated.

PyVCHAM is a new library for quantum molecular dynamics that efficiently models nonadiabatic effects using machine learning. It improves accuracy and flexibility in simulating complex molecular systems.

More Related Videos

Multimodal Nonlinear Hyperspectral Chemical Imaging Using Line-Scanning Vibrational Sum-Frequency Generation Microscopy
08:49

Multimodal Nonlinear Hyperspectral Chemical Imaging Using Line-Scanning Vibrational Sum-Frequency Generation Microscopy

Published on: December 1, 2023

Related Experiment Videos

Last Updated: May 20, 2026

Excitonic Hamiltonians for Calculating Optical Absorption Spectra and Optoelectronic Properties of Molecular Aggregates and Solids
08:04

Excitonic Hamiltonians for Calculating Optical Absorption Spectra and Optoelectronic Properties of Molecular Aggregates and Solids

Published on: May 27, 2020

Multimodal Nonlinear Hyperspectral Chemical Imaging Using Line-Scanning Vibrational Sum-Frequency Generation Microscopy
08:49

Multimodal Nonlinear Hyperspectral Chemical Imaging Using Line-Scanning Vibrational Sum-Frequency Generation Microscopy

Published on: December 1, 2023

Area of Science:

  • Computational Chemistry
  • Quantum Dynamics
  • Molecular Photophysics

Background:

  • Nonadiabatic effects are crucial for molecular photophysics and photochemistry.
  • Efficiently simulating these effects in quantum molecular dynamics is computationally challenging.
  • Accurate Hamiltonian representation within electronic state manifolds is required.

Purpose of the Study:

  • Introduce the PyVCHAM library for quantum molecular dynamics simulations.
  • Enhance the inclusion of nonadiabatic effects through machine learning.
  • Improve the accuracy, flexibility, and efficiency of vibronic coupling calculations.

Main Methods:

  • Utilizes a multimode vibronic-coupling framework.
  • Integrates machine learning for efficient parameter optimization of diabatic Hamiltonians.
  • Interfaces with electronic structure packages to generate potential energy surfaces.
  • Employs specialized loss functions and automatic differentiation for gradient computation.

Main Results:

  • PyVCHAM offers significant improvements in accuracy, flexibility, and efficiency over existing methods.
  • Introduces a standardized JSON format for storing vibronic-coupling Hamiltonians.
  • Enables the creation of interacting supersystems and aggregates via dipole-dipole coupling.

Conclusions:

  • PyVCHAM facilitates the treatment of complex, high-dimensional molecular systems.
  • The library advances the simulation of nonadiabatic dynamics in molecular systems.
  • Provides a powerful tool for research in photochemistry and photophysics.