Related Experiment Video
Updated: May 21, 2026

Determining the Likelihood of Variant Pathogenicity Using Amino Acid-level Signal-to-Noise Analysis of Genetic Variation
Published on: January 16, 2019
Population-Based Analysis of Rare Genetic Variants in Sudden Cardiac Arrest
Evan P Kransdorf1, Marco Mathias1, Kotoka Nakamura1
1Center for Cardiac Arrest Prevention, Smidt Heart Institute, Cedars-Sinai Medical Center, Los Angeles, California, USA.
Background:
More than 360,000 Americans experience sudden cardiac arrest (SCA) annually. A subgroup is caused by rare genetic variants, but existing studies are not population based and have been limited to nonsurvivors.
Objectives:
This study sought to establish the prevalence of disease-causing rare genetic variants in both survivors and nonsurvivors of SCA in the general population.
Methods:
Patients with SCA (n = 3,264) were accrued from 2 community-based studies in Oregon and California and compared with control participants (n = 13,258) from the ARIC (Atherosclerosis Risk in Communities) study. Whole genome sequencing was performed. Disease-causing (likely pathogenic or pathogenic) variants in 63 candidate genes associated with arrhythmia/cardiomyopathy were identified using updated American College of Medical Genetics and Genomics criteria. Gene-collapsing case-control analysis and variant proportion comparison with the Genome Aggregation Database was performed.
Results:
Disease-causing variants were present in 130 patients (4.0%) in the SCA group as compared with 323 participants (2.4%) in ARIC (OR: 1.59; P < 0.001). In the subgroup of patients with a nonischemic SCA, 39 of 638 patients (6.1%) harbored a disease-causing variant (OR: 2.52; P < 0.001). We identified 15 genes associated with an increased risk of SCA: ACTC1, BAG3, CACNA1C, DES, DSG2, DSP, FLNC, KCNH2, KCNQ1, LMNA, MYBPC3, MYH7, PKP2, RBM20, and TTN.
Conclusions:
Specific disease-causing variants identified in 15 arrhythmia and cardiomyopathy genes were associated with an increased risk of SCA in the community. These findings will enable targeted SCA prevention strategies in family members harboring variants in these SCA-associated genes.
More Related Videos
Related Concept Videos
Genome-wide Association Studies-GWAS
GWAS does not require the identification of the target gene involved in...
Single Nucleotide Polymorphisms-SNPs
Principles of Pharmacogenetics: Types of Genetic Variants
Comparing Copy Number Variations and SNPs
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
Pharmacogenomics: Identification of New Drug Targets

