Related Experiment Video
Updated: May 22, 2026

08:19
A Pipeline to Characterize Structural Heart Defects in the Fetal Mouse
Published on: December 16, 2022
Fetal Mouse Heart Clearing, Imaging, and 3D Reconstruction
Hamna Ammar1, Paul Delgado-Olguín2,3,4
1Translational Medicine, The Hospital for Sick Children, Peter Gilgan Centre for Research and Learning, Toronto, ON, Canada.
Methods in Molecular Biology (Clifton, N.J.)
|May 20, 2026
Summary
Three-dimensional imaging of cleared embryonic hearts using light sheet fluorescence microscopy offers a more efficient method for detecting congenital heart defects (CHDs) in mouse models. This advanced technique improves visualization and reduces the time and labor associated with traditional histological sectioning.
Area of Science:
- Developmental biology
- Medical imaging
- Cardiovascular research
Background:
- Traditional histological sectioning is standard for examining congenital heart defects (CHDs) in mouse models.
- This method is time-consuming, labor-intensive, and may miss subtle defects due to serial sectioning requirements.
Purpose of the Study:
- To present a more efficient and comprehensive method for detecting CHDs in mouse embryos.
- To highlight the advantages of 3D imaging over traditional histological techniques.
Main Methods:
- Utilized three-dimensional imaging of cleared embryonic hearts.
- Employed light sheet fluorescence microscopy for rapid z-stack acquisition.
- Reconstructed high-resolution 3D models from acquired data.
Main Results:
- The 3D imaging technique significantly improves the detection of CHDs in mouse fetuses.
- This approach enables rapid acquisition of extensive data without manual sectioning.
- Visualization of subtle defects is enhanced compared to traditional methods.
Conclusions:
- Light sheet fluorescence microscopy provides a superior alternative to traditional histology for CHD analysis in mouse models.
- This technique offers enhanced efficiency, comprehensiveness, and detection accuracy for embryonic heart development studies.

