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Updated: May 22, 2026

Applying Advanced In Vitro Culturing Technology to Study the Human Gut Microbiota
Published on: February 15, 2019
Interindividual Variation in Adult Gut Microbiome Composition in Two Rural Communities in Japan: Associations With
Sae Sekiya1, Momoka Masuda1, Yuki Mizuno1
1Department of Human Ecology, School of International Health, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
The traditional Japanese diet, rich in seafood, rice, and vegetables, is linked to higher gut microbiome diversity. Conversely, higher alcohol and fat intake correlate with lower microbiome diversity, suggesting diet impacts gut health.
Area of Science:
- Microbiome research
- Nutritional science
- Human health and longevity
Background:
- The Japanese diet is associated with exceptional longevity.
- The gut microbiome plays a crucial role in mediating diet-health relationships.
- Understanding the gut microbiome's response to traditional diets is vital for public health.
Purpose of the Study:
- To investigate the association between nutrient intake and gut microbiome diversity and composition in rural Japanese populations.
- To examine how adherence to the traditional Japanese diet influences gut microbial profiles.
Main Methods:
- Cross-sectional study of 263 adults in rural Japan.
- Food frequency questionnaires, anthropometric measurements, and fecal sample collection.
- 16S ribosomal RNA analysis to assess gut microbiome diversity and composition.
Main Results:
- Higher intake of seafood, rice, and vegetable nutrients (e.g., vitamin D, omega-3 fatty acids, fiber) correlated with increased gut microbiome diversity.
- Increased alcohol and fat consumption were associated with significantly lower microbiome diversity.
- Specific nutrient intakes (e.g., cholesterol, iron, vitamins, carbohydrates, fiber, omega-3 fatty acids) were significantly associated with gut microbiome composition (beta diversity).
Conclusions:
- Nutrient intake patterns significantly influence gut microbiome variation in Japanese populations.
- Dietary components characteristic of the Japanese diet may promote a diverse gut microbiome.
- Further research is needed to clarify the interplay between the Japanese diet and the gut microbiome.
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