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Related Concept Videos

Scanning Electron Microscopy01:07

Scanning Electron Microscopy

A scanning electron microscope (SEM) is used to study the surface features of a sample by using an electron beam that scans the sample surface in a two-dimensional manner. Typically, areas between ~1 centimeter to 5 micrometers in width can be imaged. SEM can be used to image bacteria, viruses, tissues as well as larger samples like insects. Conventional SEM gives a magnification ranging from 20X to 30,000X and spatial resolution of 50 to 100 nanometers.
Fundamental Principles
Accelerated...
Electron Microscope Tomography and Single-particle Reconstruction01:07

Electron Microscope Tomography and Single-particle Reconstruction

Transmission electron microscopy (TEM) can be used to determine the 3D structure of biological samples with the help of techniques such as electron microscope tomography and single-particle reconstruction. While single-particle reconstruction can examine macromolecules and macromolecular complexes in vitro conditions only, tomography permits the study of cell components or small cells in vivo.
Electron Tomography
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Overview of Microscopy Techniques01:22

Overview of Microscopy Techniques

The early pioneers of microscopy opened a window into the invisible world of microorganisms. In 1830, Joseph Jackson Lister created an essentially modern light microscope. The 20th century saw the development of microscopes that leveraged nonvisible light, such as fluorescence microscopy that uses an ultraviolet light source and electron microscopy that uses short-wavelength electron beams. These advances significantly improved magnification, image resolution, and contrast. By comparison, the...
Inductively Coupled Plasma Atomic Emission Spectroscopy: Instrumentation01:26

Inductively Coupled Plasma Atomic Emission Spectroscopy: Instrumentation

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Atomic Force Microscopy01:08

Atomic Force Microscopy

Atomic force microscopy (AFM) is a type of scanning probe microscopy that can analyze topographic details of various specimens like ceramics, glass, polymers, and biological samples. AFM offers over 1000 times more resolution than the optical imaging system. Images generated from AFM are three-dimensional surface profiles, offering an advantage over the flat, two-dimensional images from other imaging techniques.
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The probe is regarded as the heart of any AFM setup and comprises the...

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Related Experiment Video

Updated: May 25, 2026

User-friendly, High-throughput, and Fully Automated Data Acquisition Software for Single-particle Cryo-electron Microscopy
07:56

User-friendly, High-throughput, and Fully Automated Data Acquisition Software for Single-particle Cryo-electron Microscopy

Published on: July 29, 2021

FPGA-based reconfigurable scanning and data acquisition system for scanning electron microscopy.

Kyubin Gong1,2, Junseok Kim2, Bog G Kim3,4

  • 1Department of Nano Semiconductor Process and Equipment, Pusan National University, Busan, 46241, South Korea.

Applied Microscopy
|May 23, 2026
PubMed
Summary
This summary is machine-generated.

We developed a Field-Programmable Gate Array (FPGA)-based system for scanning electron microscopy (SEM) that significantly improves image quality and detail recovery. This advanced system enhances signal-to-noise ratio (SNR) for clearer imaging, even with shorter acquisition times.

Keywords:
Data acquisitionFPGAModulation transfer functionRaster scanReal-time synchronizationScanning electron microscopySignal-to-noise ratioSub-pixel drift correction

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Video-rate Scanning Confocal Microscopy and Microendoscopy
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Video-rate Scanning Confocal Microscopy and Microendoscopy

Published on: October 20, 2011

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Last Updated: May 25, 2026

User-friendly, High-throughput, and Fully Automated Data Acquisition Software for Single-particle Cryo-electron Microscopy
07:56

User-friendly, High-throughput, and Fully Automated Data Acquisition Software for Single-particle Cryo-electron Microscopy

Published on: July 29, 2021

Video-rate Scanning Confocal Microscopy and Microendoscopy
14:10

Video-rate Scanning Confocal Microscopy and Microendoscopy

Published on: October 20, 2011

Area of Science:

  • Instrumentation
  • Materials Science
  • Physics

Background:

  • Scanning Electron Microscopy (SEM) relies on precise scanning and data acquisition for high-resolution imaging.
  • Existing SEM systems can be limited by data acquisition speed and signal-to-noise ratio (SNR).
  • Hardware-level synchronization offers potential for enhanced performance in microscopy.

Purpose of the Study:

  • To develop and evaluate an FPGA-based reconfigurable scanning and data acquisition system for SEM.
  • To improve image quality and detail recovery in SEM by enhancing SNR and enabling faster acquisition.
  • To demonstrate the system's modularity and applicability to various point-scanning instruments.

Main Methods:

  • An FPGA (Xilinx Artix-7) was utilized for integrated raster scan waveform generation (14-bit DAC) and signal acquisition (12-bit ADC) with on-chip averaging.
  • The system features real-time USB 2.0 High-Speed data streaming at 40 MB/s.
  • Quantitative image quality benchmarks were performed using a grid-hole masking protocol and sub-pixel cross-correlation drift correction.

Main Results:

  • The FPGA-based system achieved 41-47% higher spatial SNR compared to a commercial SEM.
  • Near-theoretical temporal SNR scaling was observed, with a significant improvement over the commercial reference.
  • Stable raster operation was demonstrated in fast-scan mode, producing clearly resolved secondary-electron images.

Conclusions:

  • FPGA-based hardware synchronization significantly enhances practical recoverability of high-frequency spatial detail in SEM.
  • The developed system offers substantial SNR improvements and enables high-quality imaging under reduced acquisition times.
  • The modular architecture is adaptable for diverse point-scanning instruments beyond SEM.