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Updated: May 26, 2026

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Capturing Tissue Repair in Zebrafish Larvae with Time-lapse Brightfield Stereomicroscopy
Published on: January 31, 2015
Intracellular pH dynamics promotes zebrafish larval tail regeneration
Cambria Chou-Freed1, Christopher K Prinz2,3, Anush Margaryan4
1Department of Cell and Tissue Biology, University of California San Francisco, San Francisco, CA 94143, USA.
Biorxiv : the Preprint Server for Biology
|May 25, 2026
Summary
Intracellular pH (pHi) changes are crucial for zebrafish tail regeneration. Inhibiting the Na+/H+ exchanger (NHE) disrupts pHi dynamics, leading to impaired regeneration and altered inflammation and cell behavior.
Area of Science:
- Regenerative Biology
- Cell Physiology
- Zebrafish Models
Background:
- Intracellular pH (pHi) regulates critical cell functions like migration and proliferation.
- The role of pHi dynamics in vivo, particularly during tissue regeneration, remains underexplored.
Purpose of the Study:
- To investigate the role of intracellular pH (pHi) dynamics during zebrafish larval tail regeneration.
- To elucidate the mechanisms by which pHi changes influence cellular behaviors and tissue repair in vivo.
Main Methods:
- Generated a transgenic zebrafish line expressing a fluorescent ratiometric pHi biosensor.
- Utilized pharmacological inhibitors (NHE inhibitor) and manipulated extracellular pH to study pHi.
- Assessed cell proliferation, inflammation, myeloid cell behavior, reactive oxygen species, and GSK3 activity.
- Employed GSK3 inhibitor BIO for rescue experiments.
Main Results:
- Tail amputation induced transient pHi decrease followed by a sustained increase.
- Inhibiting Na+/H+ exchanger (NHE) activity or lowering extracellular pH attenuated the pHi increase, reduced cell proliferation, and impaired regeneration.
- NHE inhibition led to increased inflammation, altered myeloid cell behavior, decreased reactive oxygen species, and increased GSK3 activity.
- GSK3 inhibition partially rescued regeneration defects in larvae with disrupted pHi.
Conclusions:
- pHi dynamics play a critical, previously unrecognized role in coordinating tissue behaviors during zebrafish tail regeneration.
- Na+/H+ exchanger activity is essential for maintaining pHi homeostasis and enabling effective regeneration.
- GSK3 signaling is implicated in the pHi-dependent regulation of regeneration.

