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Updated: May 28, 2026

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Published on: March 21, 2021
Feasibility and Reliability of an Automated Muscle Segmentation Pipeline Linking Thoracic Supine Kyphosis and Trunk
Tianxi Liang1, Rian Atri1, Sarah Joseph1
1Department of Radiology, Weill Cornell Medicine, New York, NY 10065, USA.
Abstract:
Background: As muscles atrophy, myocytes are replaced by fat and muscle strength diminishes, increasing thoracic supine kyphosis. Here, we investigate the relationship between muscle fat percentage (muscle-fat%) and thoracic supine kyphosis on CT. Methods: Thoracic Cobb angle was measured on supine CT scans from the AtlasDataset by four observers (n=533). Nine muscles were manually labeled on 100 scans (manual cohort). An nnU-Net model was trained on 80 cases with internal validation on 20 cases, then applied to segment the remaining 433 AtlasDataset scans (automated cohort). External segmentation benchmarking was performed on 30 cases from a separate open-source dataset. Associations between supine thoracic curvature and muscle-fat% were evaluated only in AtlasDataset. Results: Manual supine thoracic Cobb angle measurements demonstrated good inter-observer reproducibility (ICC(2,k) = 0.98) with a mean across-rater per-case SD of 3.4°. The nnU-Net achieved Dice scores >0.93 across all nine muscle groups on internal and external segmentation benchmarking. For both manual and automated cohorts, thoracic supine kyphosis correlated with muscle-fat% in the paraspinal (r = 0.35, 0.42), quadratus lumborum (r = 0.29, 0.33), vastus (r = 0.38, 0.32), psoas (r = 0.21, 0.23) and latissimus dorsi (r = 0.21, 0.17) muscles. Conclusions: Automated measurement of trunk muscle-fat% provides a reproducible imaging biomarker correlated with thoracic supine kyphosis on CT. Identifying fatty atrophy of core muscles may help identify potential targets for interventions in hyperkyphotic patients.

