Protocol to generate microglia-containing cerebral organoids to model HIV neuroinflammation

Janet P Zayas1, David Gagliardi1, Stephanie Gambut1

  • 1Department of Microbial Pathogens and Immunity, Rush University Medical Center, Chicago, IL 60612, USA.

STAR Protocols
|June 1, 2026
PubMed

Insights

Researchers developed a new method to create cerebral organoids (COs) with abundant microglia. This advanced model aids in studying neuroinflammation and viral infections in the brain.

Area of Science:

  • Neuroscience
  • Stem Cell Biology
  • Immunology

Background:

  • Cerebral organoids (COs) are crucial for studying brain diseases.
  • Limited microglia in current CO models hinder research on neuroinflammation and infections.
  • A need exists for improved models with physiologically relevant microglia.

Purpose of the Study:

  • To develop a protocol for generating cerebral organoids with abundant, functional microglia.
  • To establish a robust model for investigating neurodegenerative diseases and pathogen interactions.
  • To facilitate research on viral infections and neuroinflammation in a human brain model.

Main Methods:

  • Induced pluripotent stem cells (iPSCs) were differentiated into mesoderm.
  • Embryoid bodies (EBs) were seeded and hematopoietic progenitor cells (HPCs) were harvested.
  • HPCs were co-cultured with iPSCs to generate cerebral organoids with microglia (CO-iMs).

Main Results:

  • A protocol was established for generating CO-iMs with physiologically relevant microglia.
  • The CO-iM model allows for the study of viral infections and neuroinflammation.
  • This model offers a platform for advanced research into brain pathologies.

Conclusions:

  • The developed protocol successfully generates cerebral organoids with microglia (CO-iMs).
  • CO-iMs provide a valuable platform for studying neuroinflammation and viral brain infections.
  • This model enhances the study of neurodegenerative diseases and related pathologies.

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