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Updated: Jun 5, 2026

A Psychophysics Paradigm for the Collection and Analysis of Similarity Judgments
Published on: March 1, 2022
Stimulus symmetries can confound representational similarity analyses.
Farhad Pashakhanloo1, Jacob A Zavatone-Veth1,2
1Center for Brain Science, Harvard University, Cambridge, MA, USA.
Symmetries in neural network inputs can create functionally equivalent representations that lead to different representational similarity matrices (RSMs). This confounds analyses of neural codes, especially with sparse, drifting codes.
Area of Science:
- Computational neuroscience
- Machine learning theory
- Neural coding
Background:
- Representational Similarity Analysis (RSA) is a popular method for characterizing neural codes.
- Understanding the properties and limitations of Representational Similarity Matrices (RSMs) is crucial for accurate interpretation.
- Existing methods may not fully account for complex relationships between network inputs and representations.
Purpose of the Study:
- To investigate how symmetries in network inputs can influence Representational Similarity Matrices (RSMs).
- To explore the impact of different training methods on neural code properties and their corresponding RSMs.
- To highlight challenges in comparing nonlinear neural codes.
Main Methods:
- Analysis of representational geometries derived from neural network models.
- Simulations using stochastic gradient descent and energetic regularization.
- Examination of networks trained on image data with latent symmetries.
Main Results:
- Input symmetries can lead to functionally equivalent representations with distinct RSMs, indicating different representational geometries.
- Sparse and drifting codes can emerge from training methods like stochastic gradient descent or energetic regularization, resulting in drifting RSMs.
- These phenomena were observed in networks trained for image encoding, even with latent symmetries.
Conclusions:
- Symmetries in stimuli pose a significant challenge for RSM-based analyses of neural codes.
- Functionally equivalent representations are not always related by simple rotations, complicating comparisons.
- Careful consideration of input symmetries and training dynamics is necessary for robust interpretation of neural coding.
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