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Kinetics of Lagging-strand DNA Synthesis In Vitro by the Bacteriophage T7 Replication Proteins
Published on: February 25, 2017
Generalized quasispecies model with time delays and periodic fluctuations in replication
Nolbert Morales1, Edward A Turner2
1Universidad San Sebastián, Facultad de Ingeniería, Lago Panguipulli 1390, Puerto Montt, Chile.
None:
In this research, we present a generalized quasispecies model in which population growth is governed by an arbitrary nonlinear function incorporating time delays. We begin by demonstrating that, under the constant population constraint, the dynamics of the system with time delays remain confined to the invariant manifold for both forward and backward time evolution. Furthermore, we establish that in this modified quasispecies model, defined on a single-peak fitness landscape, in the presence of backward mutation and periodic fluctuations in replication rates and in replication probabilities, the concentration of the ith replicating species exhibits a periodic behavior in time independent of the magnitude of the time delays. Specifically, this concentration oscillates between the minimum and maximum values of the probabilities Qji associated with erroneous replication; that is, the probability that a mutated replicator of type j produces an offspring of type i. Moreover, under the presence of time delays and non-constant periodic fluctuations in replication rates, we show that if the probability that a mutated replicator of type j produces an offspring of type i remains constant across all replicators, then the unique positive periodic solution is necessarily a constant solution.
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The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with the...

