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Updated: Jun 8, 2026

Incorporating Target Protein Structure Flexibility and Dynamics in Computational Drug Discovery Using Ensemble-Based Docking Analysis
Published on: June 20, 2025
In silico technologies for food-based gels: Molecular docking and molecular dynamic simulation
Behnaz Hashemi1, Elham Assadpour2, Chen Tan3
1Department of Food Materials and Process Design Engineering, Gorgan University of Agricultural Sciences and Natural Resources, Gorgan, Iran.
Abstract:
High biocompatibility and three-dimensional printability of gels make them highly promising for the food industries. Appropriateness of gels for the food industry depends heavily on their mechanical characteristics and molecular dynamics. For identifying dynamic molecular information at the atomic level, molecular docking (MD) and molecular dynamics simulation (MDS) are thought to be viable methods. They can be used as a tool in creating food gels because they may investigate chemical bonding, particular binding sites, changes in spatial structure, and binding energy between molecules, as well as assess the ideal conformation. MD techniques can reveal the biopolymer interactions. Promising methods include data-driven protein engineering, which designs proteins using computer techniques. The history and evolution of MD techniques are discussed in this article, with a focus on their uses in the food-based gel field. Lastly, research avenues for enhancing the quality attributes of food-based gels via MD and MDS are discussed.
