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Updated: Jun 24, 2026

Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline
Published on: December 7, 2021
A tutorial on causal network simulation and exploration using the causalnet R package
Kyuri Park1, Vítor V Vasconcelos2,3, Mike Lees2,3
1Computational Science Lab, Informatics Institute, University of Amsterdam, PO Box 94323, Amsterdam, 1090GH, The Netherlands. kyurheep@gmail.com.
The causalnet R package helps researchers explore how network structures impact psychological dynamics. It aids in evaluating competing theories by simulating system behavior under different causal network configurations.
Area of Science:
- Psychological modeling
- Network science
- Computational social science
Background:
- Understanding network structure's influence on system dynamics is crucial for psychological modeling.
- Current methods may not fully capture the complexity of causal relationships in psychological systems.
Purpose of the Study:
- Introduce the causalnet R package for systematically enumerating and simulating directed network structures.
- Enable researchers to evaluate competing psychological theories by linking structural assumptions to dynamic outcomes.
Main Methods:
- Systematic enumeration of candidate directed networks from adjacency templates.
- Imposing directional constraints based on prior theory or time-series models.
- Dynamic simulations using nonlinear or linear models to compare outcomes across configurations.
Main Results:
- The causalnet package facilitates theory- and evidence-constrained exploration of directed network structures.
- Simulation-based screening of dynamic implications against empirical targets is supported.
- The workflow aids in adjudicating competing psychological theories by examining predicted dynamic signatures.
Conclusions:
- causalnet provides a framework for systematically exploring how causal architecture and interaction dynamics shape psychological processes.
- This approach enhances the evaluation of theoretical accounts when causal direction is uncertain.
- Facilitates a deeper understanding of emergent dynamics in psychological systems.
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