Gut microbiota-derived lysine phenylacetylation impairs mitochondrial function and is alleviated by SIRT3

Wei Du1, Jun-Yu Xu2, Yufeng Li3

  • 1Laboratory of Biosystems and Microanalysis, State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China.

Cell Metabolism
|June 24, 2026
PubMed

Insights

Gut microbes produce a novel modification, phenylacetylation (Kpaa), linked to metabolic disorders. This modification disrupts mitochondrial function and insulin signaling, potentially contributing to obesity and liver disease.

Area of Science:

  • Microbiology
  • Metabolic Disorders
  • Molecular Biology

Background:

  • Gut microbiota (GM) disturbances are implicated in metabolic disorders.
  • Short-chain fatty acids from GM are key signaling molecules.
  • Lysine modifications play crucial roles in cellular processes.

Purpose of the Study:

  • To identify and characterize novel microbiota-derived post-translational modifications.
  • To investigate the role of phenylacetylation (Kpaa) in metabolic dysfunction.
  • To explore the link between Kpaa, mitochondrial function, and metabolic diseases.

Main Methods:

  • Induction of obesity in mice using a high-fat diet.
  • Proteomic analysis to identify lysine modifications.
  • Measurement of hepatic Kpaa levels and SIRT3 activity.
  • Investigation of PAA effects on mitochondrial function and insulin signaling in vitro and in vivo.

Main Results:

  • A novel lysine modification, phenylacetylation (Kpaa), derived from GM's phenylacetic acid (PAA) pathway was identified.
  • Hepatic Kpaa levels were elevated in diet-induced obesity and reduced by SIRT3.
  • PAA disrupted mitochondrial function and impaired insulin signaling.
  • PAA-induced Kpaa of HSP60 triggered the mitochondrial unfolded protein response, reversible by SIRT3.
  • Low hepatic SIRT3 correlated with high Kpaa in human obesity and MASH.

Conclusions:

  • Microbiota-derived phenylacetylation (Kpaa) is a novel modification linked to metabolic dysfunction.
  • Kpaa contributes to mitochondrial dysfunction and impaired insulin signaling.
  • SIRT3 plays a protective role against PAA-induced metabolic derangements.
  • Kpaa represents a potential therapeutic target for metabolic dysfunction-associated steatotic liver disease (MASLD)/metabolic dysfunction-associated steatohepatitis (MASH).

Related Concept Videos

Lysosomal Hydrolases01:22

Lysosomal Hydrolases

Lysosomes are the site for the degradation of macromolecules and biological polymers released during membrane trafficking events such as secretory, endocytic, autophagic, and phagocytic pathways. The membrane-enclosed area of the lysosome, called the lumen, contains hydrolytic enzymes active in an acidic environment. These acid hydrolases are functional at a pH between 4.5 and 5 and are involved in cellular processes such as cell signaling, energy metabolism, restoration of the plasma membrane,...
Overview of Metabolism01:40

Overview of Metabolism

Living cells constantly carry out various chemical reactions which are necessary for their proper functioning. These reactions are interlinked to one another via multiple pathways. The collection of these chemical reactions is known as metabolism.
Plant Metabolism
Sunlight, the primary source of energy in plants, is first absorbed by the chlorophyll pigments present in their leaves. Plants then use this energy to carry out photosynthesis, where water is oxidized into oxygen and carbon dioxide...
Dysbiosis of the Gut Microbiota01:18

Dysbiosis of the Gut Microbiota

The human gut microbiome includes a diverse array of microbial species, including beneficial commensals and opportunistic pathogens, which interact to support host health. These microbes contribute to essential functions such as nutrient metabolism, immune system modulation, and maintenance of intestinal barrier integrity. However, disruptions to this equilibrium—referred to as dysbiosis—can have widespread physiological consequences.Dysbiosis is often characterized by reduced microbial...
Microbiota Modulation by Antibiotics01:21

Microbiota Modulation by Antibiotics

Antibiotics have revolutionized modern medicine by saving countless lives from bacterial infections. However, their widespread use has inadvertently harmed the delicate balance of the human gut microbiota. The gut microbiota, a complex community of bacteria, archaea, viruses, and fungi, plays a vital role in regulating metabolism, immune responses, and maintaining intestinal health. Antibiotics, especially broad-spectrum types, disrupt this ecosystem by eradicating both harmful and beneficial...