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Updated: Jun 26, 2026

Deacetylation Assays to Unravel the Interplay between Sirtuins (SIRT2) and Specific Protein-substrates
Published on: February 27, 2016
Gut microbiota-derived lysine phenylacetylation impairs mitochondrial function and is alleviated by SIRT3
Wei Du1, Jun-Yu Xu2, Yufeng Li3
1Laboratory of Biosystems and Microanalysis, State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China.
Abstract:
Disturbances in the gut microbiota (GM) contribute to the pathogenesis of various prevalent metabolic disorders. Short-chain fatty acids act as signaling molecules and donors for host post-translational modifications. Here, we report a novel type of lysine modification, phenylacetylation (Kpaa), derived from the phenylalanine-dependent phenylacetic acid (PAA) metabolic pathway of the GM. Hepatic Kpaa levels were significantly elevated in mice with high-fat-diet-induced obesity and were reduced by the deacetylase sirtuin 3 (SIRT3). Proteome-wide substrates were significantly associated with mitochondria. PAA disrupted mitochondrial function and impaired insulin signaling. Mechanistically, PAA-induced K481paa of HSP60 triggered the mitochondrial unfolded protein response, which could be reversed by SIRT3. Finally, relatively low levels of hepatic SIRT3 in adults with obesity and metabolic dysfunction-associated steatohepatitis (MASH) were negatively correlated with increased Kpaa levels. Together, our study uncovered a microbiota-derived lysine acylation modification underlying its biological relevance in the development of metabolic dysfunction-associated steatotic liver disease (MASLD)/MASH.
Insights
Gut microbes produce a novel modification, phenylacetylation (Kpaa), linked to metabolic disorders. This modification disrupts mitochondrial function and insulin signaling, potentially contributing to obesity and liver disease.
Area of Science:
- Microbiology
- Metabolic Disorders
- Molecular Biology
Background:
- Gut microbiota (GM) disturbances are implicated in metabolic disorders.
- Short-chain fatty acids from GM are key signaling molecules.
- Lysine modifications play crucial roles in cellular processes.
Purpose of the Study:
- To identify and characterize novel microbiota-derived post-translational modifications.
- To investigate the role of phenylacetylation (Kpaa) in metabolic dysfunction.
- To explore the link between Kpaa, mitochondrial function, and metabolic diseases.
Main Methods:
- Induction of obesity in mice using a high-fat diet.
- Proteomic analysis to identify lysine modifications.
- Measurement of hepatic Kpaa levels and SIRT3 activity.
- Investigation of PAA effects on mitochondrial function and insulin signaling in vitro and in vivo.
Main Results:
- A novel lysine modification, phenylacetylation (Kpaa), derived from GM's phenylacetic acid (PAA) pathway was identified.
- Hepatic Kpaa levels were elevated in diet-induced obesity and reduced by SIRT3.
- PAA disrupted mitochondrial function and impaired insulin signaling.
- PAA-induced Kpaa of HSP60 triggered the mitochondrial unfolded protein response, reversible by SIRT3.
- Low hepatic SIRT3 correlated with high Kpaa in human obesity and MASH.
Conclusions:
- Microbiota-derived phenylacetylation (Kpaa) is a novel modification linked to metabolic dysfunction.
- Kpaa contributes to mitochondrial dysfunction and impaired insulin signaling.
- SIRT3 plays a protective role against PAA-induced metabolic derangements.
- Kpaa represents a potential therapeutic target for metabolic dysfunction-associated steatotic liver disease (MASLD)/metabolic dysfunction-associated steatohepatitis (MASH).
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