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Determining the Likelihood of Variant Pathogenicity Using Amino Acid-level Signal-to-Noise Analysis of Genetic Variation
Published on: January 16, 2019
Prevalence and Clinical Impact of Pathogenic Variants in Cardiomyopathy Genes Among Individuals with Cardiac
Insights
Individuals with primary cardiac conduction disorders have a higher prevalence of pathogenic/likely pathogenic (P/LP) variants in cardiomyopathy genes. Genetic testing may be beneficial for these patients, especially younger ones with heart failure.
Area of Science:
- Cardiology
- Genetics
- Genomics
Background:
- Cardiac conduction disorders are often secondary to structural heart disease, but isolated cases may precede heart failure (HF).
- Shared genetic mechanisms may link conduction disorders and HF, prompting investigation into rare variants in cardiomyopathy genes.
Purpose of the Study:
- To determine the prevalence of pathogenic/likely pathogenic (P/LP) rare variants in cardiomyopathy genes within individuals exhibiting conduction disorders.
- To assess the clinical significance and cardiovascular outcomes associated with P/LP variant carrier status in this population.
Main Methods:
- Analysis of whole genome sequence data from two large biobanks: Vanderbilt's BioVU (192,834 participants) and the All of Us Research Program (353,092 participants).
- Identification of participants with primary conduction disorders (LBBB, RBBB, high-grade AVB), excluding secondary causes.
- Evaluation of P/LP variant carrier status, incident HF, and composite outcomes of ventricular arrhythmias/sudden cardiac death/mortality.
Main Results:
- A significant association was found between conduction disorders and P/LP carrier status (2.6% in BioVU, 1.5% in AoU).
- Carrier probability increased with earlier age of conduction disorder onset and presence of HF, reaching up to 20.2% in young LBBB patients with HF.
- P/LP carrier status in individuals with conduction disorders was linked to a higher risk of incident HF and adverse cardiovascular events (VA/SCD/mortality).
Conclusions:
- Adults with primary conduction disorders exhibit a higher prevalence of P/LP variants in cardiomyopathy genes, particularly when diagnosed at younger ages.
- An interaction between P/LP carrier status and conduction disorders increases the risk of HF and other cardiovascular outcomes.
- Genetic evaluation in patients with primary conduction disorders, especially younger individuals and those with HF, may help predict long-term outcomes.
Importance:
Cardiac conduction disorders have traditionally been regarded as a secondary manifestation of underlying structural heart diseases. However, isolated conduction disorders may precede the onset of heart failure (HF) suggesting shared mechanisms.
Objective:
To evaluate the prevalence and clinical significance of pathogenic/likely pathogenic (P/LP) rare variants in cardiomyopathy genes among individuals with conduction disorders.
Design Setting And Participants:
Biobank analysis of 192,834 participants with whole genome sequence data from Vanderbilt's BioVU and 353,092 participants from the All of Us Research Program ( AoU ). Participants with primary conduction disorder (left bundle branch block [LBBB], right bundle branch block [RBBB], high-grade atrioventricular block [AVB]) were identified after excluding secondary causes.
Exposures:
P/LP variants in cardiomyopathy genes.
Main Outcomes And Measures:
Primary outcome was P/LP carrier status by age and HF status. Secondary outcomes included incident HF and composite ventricular arrhythmias/sudden cardiac death/mortality (VA/SCD/mortality).
Results:
Among 16,959 participants with conduction disorders in BioVU and 13,442 in AoU , 432 (2.6%) and 206 (1.5%) were P/LP carriers, respectively. Conduction disorder was independently associated with carrier status (BioVU p<0.001; AoU p=0.005). Carrier probability varied by age at conduction disorder onset and HF status. Among participants with HF at age 30 years, predicted carrier probability for LBBB was 7.5% in BioVU and 20.2% in AoU ; for high-grade AVB, 7.7% and 8.5%, respectively, compared with 3.7% and 2.9% among those with HF without conduction disorder. P/LP carrier status among participants with conduction disorders was associated with increased risk of incident HF (BioVU p<0.001; AoU p<0.001) and ventricular arrhythmia/sudden death/mortality (BioVU p<0.001; AoU p<0.001). Carriers also demonstrated increased susceptibility to conduction disorder following HF diagnosis, including more than two-fold higher risk of third-degree AVB (BioVU aOR 2.48, 95% CI 1.85-3.32; AoU aOR 2.26, 95% CI 1.35-3.80).
Conclusions:
Adults with primary conduction disorders have an increased prevalence of P/LP variants in cardiomyopathy genes, which is most pronounced with diagnoses at early ages of adulthood. Furthermore, there is evidence of an interaction between P/LP carrier status and conduction disorder to increase HF risk and composite cardiovascular outcomes, underscoring the potential role of genetic evaluation in patients with primary conduction disorders to inform long-term outcomes.
Key Points:
Question: What is the prevalence of pathogenic/likely pathogenic (P/LP) variants in cardiomyopathy genes among individuals with cardiac conduction disorders, and are carriers at increased risk for adverse cardiovascular outcomes?Findings: In this biobank study of 192,834 participants with whole genome sequence data from Vanderbilt's BioVU and 353,092 participants from the All of Us Research Program, conduction disorder was independently associated with P/LP carrier status, with predicted carrier probability reaching up to 20% among young participants with concurrent heart failure. Carriers with conduction disorder had higher risk of incident heart failure and ventricular arrhythmias, sudden cardiac death, or mortality. Meaning: These findings suggest that genetic testing may be warranted in patients with conduction disorder, particularly younger individuals, and those with heart failure.
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