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Chemical Inactivation of the E3 Ubiquitin Ligase Cereblon by Pomalidomide-based Homo-PROTACs
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A Systematic Direct-to-Biology Approach Identified Potent Cereblon HaloPROTACs.

Rebecca Stevens1,2, Kwok-Ho Chan1, Alice Moore1

  • 1Research Technologies, Medicines Research Centre, GSK, Gunnels Wood Road, Stevenage, Hertfordshire SG1 2NY, U.K.

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Summary

New HaloPROTACs targeting protein degradation were developed using cereblon (CRBN) binders. These tools show high potency and selectivity, advancing targeted protein degradation research without needing specific target ligands.

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High-Throughput Cellular Profiling of Targeted Protein Degradation Compounds Using HiBiT CRISPR Cell Lines

Published on: November 9, 2020

Area of Science:

  • Biochemistry
  • Molecular Biology
  • Chemical Biology

Background:

  • HaloTags are versatile tools for protein labeling and studying target biology.
  • HaloPROTACs are heterobifunctional molecules that induce proximity between E3 ligases and target proteins for degradation.
  • This induced proximity enables temporal- and dose-dependent protein degradation and efficient cellular knockdown.

Purpose of the Study:

  • To develop novel cereblon (CRBN)-recruiting HaloPROTACs.
  • To identify potent and selective HaloPROTACs through high-throughput synthesis and screening.
  • To compare the efficacy of new CRBN binders with existing IMiD-based binders.

Main Methods:

  • Utilized plate-based high-throughput synthesis for generating diverse CRBN HaloPROTAC libraries.
  • Employed direct-to-biology screening for evaluating HaloPROTAC efficacy.
  • Tested over 100 structurally diverse CRBN HaloPROTACs in a FAK-tagged cell line.

Main Results:

  • Identified highly potent CRBN-recruiting HaloPROTACs.
  • HaloPROTACs with dihydrouracil CRBN binders demonstrated superior potency and selectivity.
  • These novel binders outperformed IMiD-based counterparts in efficacy.

Conclusions:

  • Successfully developed novel CRBN-based HaloPROTACs.
  • The new HaloPROTACs offer enhanced capabilities for targeted protein degradation.
  • These tools represent a valuable addition to the HaloPROTAC toolkit for biological research.