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Related Experiment Video

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Chronic environmental caffeine exposure induces gut transcriptomic reprogramming in zebrafish.

Joey Wong1, Nicole Chan1, Fei Sun1

  • 1Temasek Life Sciences Laboratory, 1 Research Link, National University of Singapore, SG, 117604, Singapore.

Aquatic Toxicology (Amsterdam, Netherlands)
|July 1, 2026
PubMed
Summary

Caffeine exposure in zebrafish causes cardiac toxicity and mortality at high doses. Chronic, low-level caffeine disrupts gene expression in gut and other tissues, affecting metabolism and neurological pathways.

Keywords:
BradycardiaCaffeine toxicityEmerging contaminantOxidative stressTranscriptomicsdrd2a

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Area of Science:

  • Environmental toxicology
  • Aquatic toxicology
  • Molecular toxicology

Background:

  • Aquatic contaminants pose risks to ecosystems.
  • Caffeine is a common emerging contaminant in water bodies.
  • Previous research on caffeine's aquatic effects often used short-term exposures.

Purpose of the Study:

  • To investigate the physiological and transcriptomic effects of acute and chronic caffeine exposure in zebrafish (Danio rerio).
  • To understand caffeine's impact across a range of concentrations, from acute high doses to chronic environmentally relevant levels.

Main Methods:

  • Zebrafish were exposed to varying concentrations of caffeine.
  • Physiological responses including mortality and heart rate were monitored.
  • Transcriptomic analysis (RNA-seq) and quantitative PCR (RT-qPCR) were used to assess gene expression changes in various tissues.

Main Results:

  • Acute high-dose caffeine exposure induced bradycardia and mortality with complex dose-time-response relationships.
  • Chronic low-dose exposure led to tissue-specific gene expression changes, notably in the gut.
  • Significant dysregulation of retinol metabolism, lysosomal function, and immune processes was observed in the gut at higher chronic doses.
  • Systemic effects included altered dopamine and adenosine receptor expression in the brain and potential suppression of antioxidant pathways in the liver.

Conclusions:

  • Caffeine causes significant cardiac toxicity and mortality in zebrafish at high concentrations.
  • Chronic exposure to environmentally relevant caffeine concentrations induces molecular reprogramming across multiple organ systems.
  • Caffeine disrupts key metabolic, neurological, and oxidative stress pathways in aquatic organisms, indicating a potential risk to aquatic ecosystems.