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Updated: Jul 9, 2026

Assays for Validating Histone Acetyltransferase Inhibitors
Published on: August 6, 2020
Mapping the Safety Profile of Histone Deacetylase Inhibitors in Children with Cancer
Alessandra Cianflone1, Francesco Fabozzi2, Fabiana Cacace3
1Clinical and Translational Research Unit, AORN Santobono Pausilipon-IRCCS, Naples, Italy.
Background:
Epigenetic alterations, including aberrant DNA hypermethylation and histone modifications, contribute to oncogenesis by disrupting normal gene expression programs. Unlike genetic mutations, these changes are potentially reversible, providing a strong biological rationale for the development of histone deacetylase inhibitors (HDACi) for therapy. Several HDACi are currently under investigation, either as monotherapy or in combination with other anticancer agents. A comprehensive understanding of toxicity is essential to appropriately balance risks and benefits, particularly because HDACi are most frequently evaluated within combination regimens. To date, no epigenetic agents have received regulatory approval for pediatric malignancies, and clinical development in this population remains at an early stage. The aim of this study was to systematically characterize the toxicity profiles associated with HDACi administration in pediatric patients with cancer, including both solid tumors and hematologic malignancies. To this end, we conducted a systematic review of the literature in accordance with the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines.
Results:
Toxicity profiles were extracted from twelve studies investigating six HDACi: panobinostat, vorinostat, entinostat, pracinostat, valproic acid, and depsipeptide. Eleven studies were Phase I or Phase I/II clinical trials, and one was a retrospective study. Patients with solid central nervous system tumors represented the most frequently studied population. Overall, treatment-related toxicities were predominantly mild, with few severe (grade 4) adverse events, mainly within the hematologic category. According to the Common Terminology Criteria for Adverse Events grading system, hematologic toxicities were the most common adverse events across all HDACi, particularly thrombocytopenia, followed by mild gastrointestinal and metabolic toxicities. Cardiac, neurological, respiratory, and systemic toxicities were generally mild, less frequent, and considered treatment-related. Dose and route of administration influenced both the frequency and severity of toxicities. Pan-HDAC inhibitors were associated with the highest rates of toxicity.
Conclusions:
HDACi-related toxicities were moderate and manageable in pediatric patients. Differences in toxicity were observed among treatments, with higher doses linked to increased toxicity. These findings support further clinical trial development of HDACi in pediatric malignancies. However, Phase I design, small patient numbers, and heterogeneity in age, weight, and disease characteristics are major limitations in accurately assessing HDACi-induced toxicity.
Insights
Histone deacetylase inhibitors (HDACi) show manageable toxicity in pediatric cancer patients, primarily mild hematologic events like thrombocytopenia. Higher doses increase toxicity, supporting further clinical trials for these epigenetic agents in children.
Area of Science:
- Oncology
- Pharmacology
- Genetics
Background:
- Epigenetic alterations, such as DNA hypermethylation and histone modifications, are implicated in cancer development.
- Histone deacetylase inhibitors (HDACi) offer a potentially reversible therapeutic strategy for various cancers.
- Understanding HDACi toxicity is crucial, especially in pediatric oncology where clinical development is nascent.
Purpose of the Study:
- To systematically review and characterize the toxicity profiles of HDAC inhibitors in pediatric cancer patients.
- To evaluate the safety of HDACi in both solid tumors and hematologic malignancies in pediatric populations.
- To inform the ongoing clinical development of epigenetic therapies for childhood cancers.
Main Methods:
- A systematic literature review was conducted following PRISMA guidelines.
- Twelve studies investigating six HDAC inhibitors (panobinostat, vorinostat, entinostat, pracinostat, valproic acid, depsipeptide) were analyzed.
- Toxicity data were extracted and categorized based on the Common Terminology Criteria for Adverse Events.
Main Results:
- Hematologic toxicities, particularly thrombocytopenia, were the most frequent adverse events across all HDAC inhibitors.
- Gastrointestinal and metabolic toxicities were generally mild; cardiac, neurological, respiratory, and systemic effects were less common and mild.
- Dose, route of administration, and drug type (pan-HDAC inhibitors) influenced toxicity frequency and severity.
Conclusions:
- HDAC inhibitor-related toxicities are generally moderate and manageable in pediatric cancer patients.
- Increased toxicity is associated with higher doses, underscoring the importance of dose optimization.
- Limitations include small patient numbers and heterogeneity, necessitating further robust clinical trials.
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