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Evaluating Approaches for Inference Testing of Whole-Brain Densely Sampled Single-Subject Task fMRI Data
Michelle C Medina1,2, Neha A Reddy1,2, Molly G Bright1,2
1Department of Biomedical Engineering, Northwestern University, Evanston, IL, United States.
Biorxiv : the Preprint Server for Biology
|July 10, 2026
Summary
Task-based functional MRI (fMRI) mapping reveals whole-brain voxel-level analysis with false discovery rate (FDR) correction offers the most sensitive and stable approach for individual functional localization, even with shorter scan times.
Area of Science:
- Neuroimaging
- Systems Neuroscience
- Functional Magnetic Resonance Imaging (fMRI)
Background:
- Task-based fMRI enables precise mapping of individual brain activity patterns.
- Current methods often focus on cortical activation, limiting systems-level understanding.
- Statistical analysis approaches for densely sampled, whole-brain fMRI data require further development.
Purpose of the Study:
- To evaluate statistical analysis methods for whole-brain, task-based fMRI data.
- To compare the sensitivity and stability of different inference approaches for individual functional localization.
- To investigate the auditory system, including subcortical components, using multi-echo, densely sampled data.
Main Methods:
- Collected whole-brain, multi-echo, densely sampled fMRI data for the auditory system.
- Evaluated whole-brain approaches: voxel-level and cluster-level inference with varying thresholds, non-parametric permutation inference.
- Assessed region-specific approaches: top % t-statistics and non-parametric permutation inference.
Main Results:
- Whole-brain voxel-level analysis with false discovery rate (FDR) correction (p<0.05) demonstrated the highest sensitivity and consistency in detecting auditory regions across subjects and scan durations.
- Region-specific top % t-statistic analysis showed utility as an exploratory tool.
- Both whole-brain and region-specific approaches provided valuable insights into functional localization.
Conclusions:
- Whole-brain voxel-level analysis with FDR correction is a robust method for individual functional localization in task-based fMRI.
- Region-specific top % t-statistic analysis can complement standard methods for exploratory functional mapping.
- Further research into statistical analysis is crucial for advancing systems-level fMRI studies.

