Related Experiment Video
Updated: Jul 15, 2026

Identifying Microglia and Peripheral Infiltrating Macrophages in the Injured Spinal Cords Using Flow Cytometry
Published on: June 24, 2025
Flow Cytometry Study of Immune Cell Subpopulations from the Mouse Vertebral Bone Marrow and Intervertebral Disc
Dalin Wang1, Mingcai Zhang1, Richard Hastings2
1The Harrington Laboratory for Molecular Orthopedics, Department of Orthopedic Surgery, University of Kansas Medical Center, 3901 Rainbow Boulevard, Kansas City, KS, USA.
Objective:
Although endplate (EP) injury may cause intervertebral disc (IVD) degeneration and Modic changes (MCs) in the vertebral bone marrow (VBM), EP injury-induced synchronous cellular reactions and their crosstalk in the IVD and VBM remain unclear. This protocol-based study aimed to streamline and optimize the methods of tissue harvest and cell preparation for flow cytometry (FCM) analysis of T-cell and macrophage subpopulations in both VBM and IVD adjacent to the surgically induced EP microfracture in mice.
Methods:
EP injury or sham procedure was performed at the spinal levels L4-5 and L5-6 in male mice. Step-by-step techniques on the harvest of lumbar VBM and IVD tissues, isolation of tissue-specific cells, and generation of single cell suspensions were described. FCM analysis was performed using specific antibodies against cell-surface markers and multi-color cytometry for precise delineation of cell subsets to explore the cellular mechanism of MCs. An extracellular staining assay to identify macrophage subsets, as well as extra- and intra-cellular staining assays to identify T lymphocyte subsets from the VBM and IVD, were performed and optimized.
Results:
FCM analysis demonstrated that significantly increased macrophage numbers and M2a polarization response were observed in VBM samples from the sham and EP injury groups, while the ratio of M2a/total number of macrophages was significantly increased and the ratio of M1/M2a was significantly decreased in IVDs from the sham and EP injury groups. A significantly increased Treg cell response was detected in VBM samples from the EP injury group, but not the sham group.
Conclusions:
This protocol reports novel and reproducible methods of tissue harvest, cell preparation, and antibody selection for flow cytometry analysis of T-cell and macrophage subpopulations isolated from the VBM and IVD following EP injury in mice. This protocol may be utilized for exploring the cellular mechanism of MCs and IVD degeneration in animal models.
More Related Videos
12:23Flow Cytometry Analysis of Immune Cell Subsets within the Murine Spleen, Bone Marrow, Lymph Nodes and Synovial Tissue in an Osteoarthritis Model
Published on: April 24, 2020
06:28Simplified Intrafemoral Injections Using Live Mice Allow for Continuous Bone Marrow Analysis
Published on: November 10, 2023