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Exploring Caspase Mutations and Post-Translational Modification by Molecular Modeling Approaches
Published on: October 13, 2022
Cryo-EM structures of human caspase-4 in complex with full-length gasdermin D
Ying Luan1, Enbo Chen1, Youdong Mao2
1State Key Laboratory for Artificial Microstructure and Mesoscopic Physics, School of Physics, Peking University, Beijing 100871, China; Peking-Tsinghua Joint Center for Life Sciences, Peking University, Beijing 100871, China.
Abstract:
Caspase-4 drives non-canonical inflammasome signaling by cleaving gasdermin D (GSDMD) to trigger pyroptosis. Cleavage of the interdomain linker (IDL) in caspase-4 yields distinct autoprocessed forms-p20/p12, p22/p10, and p20/p10. While both p22/p10 and p20/p10 forms of caspase-4 are capable of processing GSDMD, how these GSDMD-cleaving states are structurally organized in complex with full-length human GSDMD remains unclear. Here, we present cryo-EM structures of full-length human GSDMD bound to two human caspase-4 autoprocessed forms, p22/p10 and p20/p10. Both complexes preserve exosite-mediated recognition of the GSDMD C-terminal domain, but they display distinct catalytic-groove occupancy. In the p22/p10 complex, a residual LEED-containing IDL segment folds back into the catalytic pocket, whereas in the p20/p10 complex, the GSDMD FLTD cleavage-site linker occupies the same groove. These structures reveal how distinct IDL-processing states are associated with different modes of catalytic-groove occupancy and provide a structural framework for understanding full-length GSDMD recognition by human caspase-4.
Insights
Caspase-4 cleaves gasdermin D (GSDMD) to trigger pyroptosis. Cryo-EM structures reveal how different caspase-4 forms bind GSDMD, clarifying inflammasome signaling mechanisms.
Area of Science:
- Molecular Biology
- Structural Biology
- Immunology
Background:
- Caspase-4 initiates non-canonical inflammasome signaling by cleaving gasdermin D (GSDMD), leading to pyroptosis.
- Autoprocessing of caspase-4 generates distinct forms (p20/p12, p22/p10, p20/p10) that can process GSDMD.
Purpose of the Study:
- To elucidate the structural basis of full-length human GSDMD recognition by distinct autoprocessed forms of human caspase-4.
- To understand how different caspase-4 cleavage states influence GSDMD binding and processing.
Main Methods:
- Cryo-electron microscopy (cryo-EM) was used to determine the structures of full-length human GSDMD complexed with p22/p10 and p20/p10 caspase-4 forms.
- Structural analysis focused on protein-protein interactions, including exosite recognition and catalytic groove occupancy.
Main Results:
- Cryo-EM structures revealed complexes of full-length human GSDMD with p22/p10 and p20/p10 caspase-4.
- Both complexes showed exosite-mediated recognition of the GSDMD C-terminal domain.
- Distinct catalytic groove occupancy was observed: the p22/p10 complex featured an interdomain linker (IDL) segment, while the p20/p10 complex had the GSDMD FLTD cleavage site in the groove.
Conclusions:
- The distinct structural organizations of caspase-4/GSDMD complexes explain how different autoprocessing states mediate GSDMD cleavage.
- These findings provide a structural framework for understanding GSDMD recognition by caspase-4, crucial for inflammasome signaling.
- The study clarifies the molecular mechanisms underlying pyroptosis initiation via non-canonical inflammasome activation.
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Cryo-electron Microscopy

