Quantum bioinformatics: a systematic review of methods, trends, and challenges
Mehdi Khalaj1, Steven Rayan2,3, Lingling Jin1
1Department of Computer Science, University of Saskatchewan, 110 Science Pl., Saskatoon, SK, S7N 5C9, Canada.
Briefings in Bioinformatics
|July 17, 2026
Summary
Quantum computing offers new solutions for complex bioinformatics challenges, addressing limitations of classical methods. This review synthesizes current research in quantum bioinformatics, highlighting trends and future directions.
Area of Science:
- Bioinformatics
- Quantum Computing
- Computational Biology
Background:
- Classical computational approaches are limited by the complexity and scale of biological data.
- Quantum computing presents a promising paradigm for tackling computationally hard problems in bioinformatics.
- Existing reviews need supplementation with an updated synthesis of quantum bioinformatics research.
Purpose of the Study:
- To provide a structured overview of the emerging field of quantum bioinformatics.
- To synthesize current research, identify trends, and analyze methodological patterns.
- To examine quantum and hybrid approaches, problem formulations, and encoding strategies.
Main Methods:
- Systematic collection and organization of studies across 10 bioinformatics domains.
- Analysis of quantum and hybrid quantum-classical approaches.
- Evaluation of problem formulations and encoding strategies for quantum computation.
Main Results:
- Identification of research trends, dominant themes, and recurring methodological patterns in quantum bioinformatics.
- Examination of approaches tailored to noisy intermediate-scale quantum (NISQ) devices.
- Synthesis of limitations, open challenges, and prospective research directions.
Conclusions:
- Quantum bioinformatics is an emerging field with significant potential to overcome classical computational limitations.
- Current research focuses on adapting quantum algorithms and addressing NISQ device constraints.
- Further research is needed to fully realize the potential of quantum computing in biological data analysis.
Related Concept Videos
Genomics
Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
Next-generation Sequencing
The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and collaboration between several research teams and funding agencies. Today, with the advent of next-generation sequencing technologies, the cost and time of sequencing a human genome have dropped over 100 fold.
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features.
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features.
Sanger Sequencing
DNA sequencing is a fundamental technique that is routinely used in the biological sciences. This method can be applied to a range of questions at different scales - from the sequencing of a cloned DNA fragment or the study of a mutation in a gene up to whole-genome sequencing. However, despite the widespread use of sequencing today, it was not until 1977 that Fredrick Sanger and his collaborators developed the chain-termination method to decode DNA sequences. It relies on the separation of a...
Maxam-Gilbert Sequencing
In the same year as the discovery of the Sanger sequencing method, another group of scientists, Allan Maxam and Walter Gilbert, demonstrated their chemical-cleavage method for DNA sequencing. The Maxam-Gilbert method relies on using different chemicals that can cleave the DNA sequence at specific sites, the separation of resulting DNA fragments of variable size using electrophoresis, and deciphering the DNA sequence from the resulting gel bands.
Challenges of the Maxam-Gilbert Method
The...
Challenges of the Maxam-Gilbert Method
The...

