Related Experiment Video
Updated: Aug 6, 2026

08:21
Curation of Computational Chemical Libraries Demonstrated with Alpha-Amino Acids
Published on: April 13, 2022
Complete Computational Exploration of Eight-Carbon Hydrocarbon Chemical Space
Stephen J Harman1, Kristaps Ermanis1
1School of Chemistry, University of Nottingham, University Park, NottinghamNG7 2RD, United Kingdom.
The Journal of Organic Chemistry
|July 22, 2026
Summary
Researchers computationally explored hydrocarbons with 8 carbons or less, creating the CHX8 database. They found many unconventional structures, including strained and anti-Bredt systems, are surprisingly synthesizable.
Area of Science:
- Computational Chemistry
- Organic Chemistry
- Materials Science
Background:
- Hydrocarbons are fundamental chemical compounds.
- The chemical space of hydrocarbons with 8 carbons or less remains underexplored.
- Understanding novel hydrocarbon structures is key for new applications.
Purpose of the Study:
- To exhaustively enumerate and computationally explore the chemical space of hydrocarbons with 8 carbons or less.
- To develop a database (CHX8) of stable molecules and assess their synthesizability.
- To investigate the accessibility of strained, unsaturated, and anti-Bredt ring systems.
Main Methods:
- Density functional theory (DFT) for geometry optimization and energy calculations.
- Identification of all stable molecular structures within the defined chemical space.
- Assignment of a universal strain value as a proxy for synthesizability.
Main Results:
- A comprehensive database, CHX8, containing all stable hydrocarbons with 8 carbons or less was generated.
- A universal strain metric was developed, guiding the synthetic plausibility of molecules.
- Contrary to expectations, most unconventional structures, including strained and anti-Bredt systems, exhibit low relative strain energies, comparable to or less than cubane.
Conclusions:
- The CHX8 database provides a valuable resource for discovering novel hydrocarbon molecules.
- Many theoretically inaccessible strained and unsaturated hydrocarbons are predicted to be synthetically accessible.
- This work is expected to stimulate the synthesis of new molecules for diverse applications and aid machine learning model development.
Related Concept Videos
Conformations of Ethane and Propane
In an organic molecule, free rotation about the carbon-carbon single bond results in energetically different conformers of the molecule. Due to this rotation, called the internal rotation, ethane has two major conformations — staggered and eclipsed.
Staggered conformation is a low energy and more stable conformation with the C-H bonds on the front carbon placed at 60°dihedral angles relative to the C-H bonds on the back carbon, leading to a reduced torsional strain. In staggered ethane, the...
Staggered conformation is a low energy and more stable conformation with the C-H bonds on the front carbon placed at 60°dihedral angles relative to the C-H bonds on the back carbon, leading to a reduced torsional strain. In staggered ethane, the...
Carbon Skeletons
Life on Earth is carbon-based, as all macromolecules that make up living organisms contain carbon atoms. All organic compounds have a carbon backbone. Each carbon atom is tetravalent and can bond with four other atoms, making it an extraordinarily flexible component of biological molecules. Because carbon’s valence electrons are stable, it rarely becomes an ion. As the carbon chain increases in length, structural modifications such as ring structures, double bonds, and branching side chains...
Cycloalkanes
Cycloalkanes are saturated cyclic hydrocarbons with carbon atoms arranged in the form of rings. They have two fewer hydrogen atoms than the corresponding acyclic alkane; therefore, their general formula is CnH2n. The structural formulas of cycloalkanes are simplified using the line-angle representation. The regular polygons are used to represent the cycloalkane rings, with each side representing a carbon-carbon bond.
The IUPAC nomenclature of cycloalkanes follows similar rules that apply to...
The IUPAC nomenclature of cycloalkanes follows similar rules that apply to...
Conformations of Cyclohexane
Cyclohexane does not exist in a planar form due to the high angle and torsional strain it would experience in the planar structure. Instead, it adopts non-planar chair and boat conformations.
The chair form is the most stable and derives its name from its resemblance to the “easy chair.” In the chair conformation, two carbon atoms are arranged out-of-plane — one above and one below, minimizing the torsional strain. In the chair form, the bond angle is very close to the ideal tetrahedral value,...
The chair form is the most stable and derives its name from its resemblance to the “easy chair.” In the chair conformation, two carbon atoms are arranged out-of-plane — one above and one below, minimizing the torsional strain. In the chair form, the bond angle is very close to the ideal tetrahedral value,...
Aromatic Hydrocarbon Anions: Structural Overview
Neutral hydrocarbons like cyclopentadiene with an odd number of carbon atoms and one intervening CH2 group in the ring are not aromatic. Cyclopentadiene with 4 π electrons does not satisfy the 4n + 2 π electron rule. Additionally, the intervening CH2 group is sp3 hybridized and lacks a vacant p orbital, thereby interrupting the overlap of p orbitals in a continuous manner and preventing the delocalization of π electrons throughout the ring.
Due to the absence of continuous overlap of p...
Due to the absence of continuous overlap of p...
Conformations of Butane
Unlike ethane and propane that have only two major conformations, butane has more than two conformers. The staggered form of butane in which the bulky methyl groups on the two carbons are placed on opposite sides, that is, at a dihedral angle of 180°, is the lowest energy, most stable form — called the anti conformer. This conformation is stabilized due to the absence of steric repulsion between the largely spaced out methyl groups. The other two staggered conformations are degenerate and have...
