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Updated: Aug 13, 2026

Hybrid Ensemble and Single-molecule Assay to Image the Motion of Fully Reconstituted CMG
Published on: July 26, 2024
Structural and single-molecule insights into the core human mitochondrial DNA replisome
Ismael Plaza-G A1, Samuel Miguez-Amil2, Allison M Hayes3
1Instituto Madrileño de Estudios Avanzados en Nanociencia, IMDEA Nanociencia, Madrid, Spain.
Abstract:
Replication of human mitochondrial DNA (mtDNA) is essential for the maintenance of oxidative phosphorylation and cellular energy homeostasis. Impairment of this process leads to mtDNA deletions, depletion, and point mutations that underlie a broad spectrum of mitochondrial diseases, as well as contributing to neurodegeneration, aging, and cancer. The core human mitochondrial replisome, composed of DNA polymerase γ (Polγ), the replicative helicase Twinkle, and the mitochondrial single-stranded DNA-binding protein (mtSSB), is the main complex responsible for replicating the mitochondrial genome through a highly coordinated yet still incompletely understood mechanism. Mutations in the nuclear genes encoding these proteins represent the most common cause of inherited disorders affecting mtDNA maintenance, underscoring the importance of understanding their coordinated molecular function. Recent advances in cryo-electron microscopy and single-molecule approaches have provided unprecedented insight into the structural organization and dynamic operation of the core components of the mitochondrial replisome. These complementary methods are establishing a quantitative mechanistic framework for understanding how the mitochondrial replisome initiates, progresses, and regulates the replication of the light and heavy strands of mtDNA. In the present review, we integrate recent structural and single-molecule findings to describe the mechanisms governing the activity of Polγ, Twinkle, and mtSSB at the mitochondrial replication fork, and discuss remaining challenges toward reconstructing a complete mechanistic model of human mtDNA replication.
Insights
Human mitochondrial DNA (mtDNA) replication by the replisome (DNA polymerase γ, Twinkle, and mtSSB) is crucial for cellular energy. Understanding this process illuminates its role in mitochondrial diseases and aging.
Area of Science:
- Molecular Biology
- Genetics
- Biochemistry
Background:
- Human mitochondrial DNA (mtDNA) replication is vital for cellular energy and its impairment causes diseases.
- The mitochondrial replisome, comprising DNA polymerase γ (Polγ), Twinkle helicase, and mtSSB, orchestrates mtDNA replication.
- Mutations in genes for these proteins are common causes of inherited mtDNA maintenance disorders.
Purpose of the Study:
- To review recent advances in understanding the human mitochondrial replisome's structure and function.
- To integrate structural and single-molecule data for a mechanistic view of mtDNA replication.
- To highlight remaining challenges in modeling the complete mtDNA replication process.
Main Methods:
- Cryo-electron microscopy (cryo-EM) to visualize the replisome structure.
- Single-molecule biophysics to study the dynamic behavior of replication proteins.
- Integration of structural and functional data to build mechanistic models.
Main Results:
- Recent cryo-EM and single-molecule studies offer detailed insights into the mitochondrial replisome's organization and dynamics.
- A quantitative framework is emerging for how the replisome initiates, progresses, and regulates mtDNA replication.
- Mechanisms of Polγ, Twinkle, and mtSSB at the replication fork are being elucidated.
Conclusions:
- Understanding the coordinated action of Polγ, Twinkle, and mtSSB is key to deciphering mtDNA replication.
- Advances in structural and single-molecule methods are crucial for mechanistic insights.
- Further research is needed to develop a complete model of human mtDNA replication.
Related Concept Videos
The Replisome
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with the...
The Replisome
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with the...
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The DNA Replication Fork
The DNA Replication Fork

