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ICA-S3M: switching state-space model guided automatic EEG artifact removal from independent components
Si Long Jenny Tou1, Mingjian He1,2, Scott Yeiichi Oshiro1
1Department of Anesthesiology, Stanford Medicine, Palo Alto, CA, United States.
Frontiers in Neuroscience
|August 15, 2026
Summary
Electromyographic (EMG) artifact removal in scalp electroencephalography (EEG) is improved by ICA-S3M, a novel two-stage pipeline. This method effectively separates neural activity from muscle artifacts without requiring training data, outperforming existing CNN approaches.
Area of Science:
- Neuroscience
- Signal Processing
- Biomedical Engineering
Background:
- Electromyographic (EMG) artifact poses a significant challenge in scalp electroencephalography (EEG) due to spectral overlap with neural signals.
- Muscle contractions can cause widespread artifact distribution across independent components (ICs), a phenomenon known as EMG smearing.
Purpose of the Study:
- To introduce ICA-S3M, a novel two-stage pipeline for robust EMG artifact removal from EEG recordings.
- To evaluate the performance of ICA-S3M against a convolutional neural network (CNN) in diverse EEG datasets.
Main Methods:
- The ICA-S3M pipeline first decomposes EEG data using independent component analysis (ICA).
- A switching state-space model is applied to each IC, separating neural oscillations (damped oscillators) from broadband artifacts (AR(2) process).
- The method generates explicit artifact probabilities without requiring training data.
Main Results:
- ICA-S3M significantly improved signal-to-noise ratio (SNR) by 12.4 dB in simulations, outperforming a CNN (1.2 dB).
- On a semi-synthetic dataset, ICA-S3M surpassed the CNN in 38 of 42 scenarios across multiple metrics and scalp regions.
- The CNN exhibited "alpha hallucination," introducing spurious alpha peaks, a failure mode avoided by ICA-S3M's adaptive approach.
Conclusions:
- ICA-S3M provides an interpretable, principled, and training-free alternative for challenging EEG artifact removal.
- The method's ability to adapt to individual recording spectral content prevents common failure modes seen in template-based approaches.
- ICA-S3M offers a significant advancement in EEG signal processing for accurate neural activity analysis.

