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Quantitative Detection of DNA-Protein Crosslinks and Their Post-Translational Modifications
Published on: April 21, 2023
Protease-Mediated TAR DNA-Binding Protein 43 (TDP-43) Pathogenesis: From Molecular Mechanisms to Therapeutic
Joyal Xavier1, Meenakshi Singh1, Sampada Tamhankar1
1Department of Drug Discovery and Development, Harrison College of Pharmacy, Auburn University, Auburn, Alabama 36849, United States.
Abstract:
TDP-43 proteinopathy is the defining pathological feature in approximately 50% of frontotemporal lobar degeneration (FTLD) cases, yet the precise mechanism or biochemical transition from nuclear proteostasis to cytoplasmic toxicity remains a critical knowledge gap. While its role in repressing nonconserved cryptic exons is well reported, this review highlights and explores the synergy between site-specific proteolysis and post-translational modification (PTM)-induced phase transitions. We propose a mechanism where primary endoproteolytic cleavage by calpain, caspase, and asparaginyl endopeptidase acts as a "protease switch" to generate a C-terminal fragment that disturbs the nuclear import ability of TDP43. These fragments serve as preferred substrates for coordinated hyperphosphorylation and SUMOylation, which drive widespread transcriptome shutdown. We emphasize that synthesizing a small-molecule bridge between these proteins and TDP-43 reduces aberrant protease-mediated fragmentation and delocalization of many proteins. Therefore, in this review, we highlight several therapeutic drug discovery strategies to intercept TDP-43 at the preaggregation stage and restore its function, offering disease-modifying pathways.
Insights
TDP-43 proteinopathy in frontotemporal lobar degeneration (FTLD) involves cleavage and PTMs, leading to toxicity. Therapeutic strategies aim to intercept TDP-43 before aggregation, offering disease-modifying pathways.
Area of Science:
- Neuroscience
- Molecular Biology
- Biochemistry
Background:
- TDP-43 proteinopathy defines ~50% of frontotemporal lobar degeneration (FTLD) cases.
- The transition from nuclear proteostasis to cytoplasmic toxicity is a critical knowledge gap.
- TDP-43's role in repressing cryptic exons is established, but its pathological mechanisms require further elucidation.
Purpose of the Study:
- To explore the synergy between site-specific proteolysis and PTM-induced phase transitions in TDP-43 toxicity.
- To propose a mechanism for TDP-43's transition from nuclear to cytoplasmic toxicity.
- To highlight therapeutic drug discovery strategies targeting TDP-43.
Main Methods:
- Review of existing literature on TDP-43 proteolysis and post-translational modifications.
- Analysis of proposed mechanisms involving endoproteolytic cleavage and subsequent PTMs.
- Discussion of potential therapeutic interventions targeting TDP-43.
Main Results:
- Primary endoproteolytic cleavage by specific proteases acts as a "protease switch".
- Cleavage generates C-terminal TDP-43 fragments that disrupt nuclear import.
- Hyperphosphorylation and SUMOylation of these fragments drive transcriptome shutdown.
- Small-molecule interventions can reduce aberrant fragmentation and delocalization.
Conclusions:
- A proposed mechanism links protease cleavage and PTMs to TDP-43-mediated toxicity.
- Targeting TDP-43 at the preaggregation stage offers disease-modifying therapeutic potential.
- Interception strategies may restore TDP-43 function and mitigate FTLD progression.
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