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Characterization of Functionally Associated miRNAs in Glioblastoma and their Engineering into Artificial Clusters for Gene Therapy
Published on: October 4, 2019
Conserved miRNA regulators of PD-1/PD-L1 in glioblastoma and colorectal cancer
Alja Zottel1,2, Maša Zdralević3,4, Janja Rašović5
1Center for Functional Genomics and Biochips, Institute of Biochemistry and Molecular Genetics, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia.
Abstract:
Immune checkpoint inhibitors (ICIs) targeting the PD-1/PD-L1 axis have transformed cancer therapy, but their efficacy remains limited in glioblastoma (GBM) and heterogeneous in colorectal cancer (CRC). MicroRNAs (miRNAs) regulate gene expression at the post-transcriptional level, including immune checkpoint molecules, yet conserved regulatory miRNA networks across distinct cancers remain poorly defined. Five conserved miRNAs (miR-106a-5p, miR-106b-5p, miR-20a-5p, miR-20b-5p, miR-138-5p) fulfilled the selection criteria and were consistently dysregulated in GBM and CRC. MiR-106a-5p and miR-106b-5p were upregulated in both cancers and showed favourable prognostic associations, with higher expression correlating with improved survival. miR-20a-5p and miR-20b-5p were preferentially expressed in microsatellite-stable (MSS) CRC and correlated with favourable outcomes in both cancers, whereas miR-138-5p was downregulated in both tumours compared to normal tissue, but showed opposite survival associations, with higher levels linked to worse prognosis. Correlation analysis revealed significant inverse associations between several miRNAs and checkpoint gene expression, including moderate inverse correlations for CD274-miR-106a-5p in GBM, CD274-miR-20a-5p in CRC and PDCD1LG2-miR-20a-5p in both cancers. Pan-cancer profiling demonstrated broad and heterogeneous dysregulation, with expression absent in ovarian cancer for four of the five miRNAs. Pathway enrichment implicated the TGF-β, Hippo, FoxO, and cell cycle pathways, consistent with their known roles in tumour immune evasion. We identified a conserved set of miRNAs that are dysregulated in both GBM and CRC, correlate with survival, and display inverse relationships with PD-1/PD-L1/PD-L2 expression. These miRNAs represent candidate regulators of the PD-1/PD-L1/PD-L2 axis and potential biomarkers of tumour biology that may influence immune checkpoint signalling.
Insights
Five microRNAs (miRNAs) are dysregulated in glioblastoma (GBM) and colorectal cancer (CRC), impacting immune checkpoint inhibitor (ICI) therapy. These miRNAs may serve as biomarkers for tumor biology and immune signaling.
Area of Science:
- Oncology
- Molecular Biology
- Immunology
Background:
- Immune checkpoint inhibitors (ICIs) targeting the PD-1/PD-L1 axis have revolutionized cancer treatment.
- However, their effectiveness is limited in glioblastoma (GBM) and variable in colorectal cancer (CRC).
- Conserved microRNA (miRNA) regulatory networks influencing immune checkpoints across cancers are not well understood.
Purpose of the Study:
- To identify conserved miRNAs regulating immune checkpoint molecules in GBM and CRC.
- To investigate the prognostic significance of these miRNAs.
- To explore the relationship between miRNA expression and PD-1/PD-L1/PD-L2 expression.
Main Methods:
- Bioinformatic analysis of miRNA expression data from GBM and CRC patient cohorts.
- Correlation analysis between miRNA expression and immune checkpoint gene expression (CD274, PDCD1LG2).
- Survival analysis to assess the prognostic value of identified miRNAs.
Main Results:
- Five conserved miRNAs (miR-106a-5p, miR-106b-5p, miR-20a-5p, miR-20b-5p, miR-138-5p) were consistently dysregulated in GBM and CRC.
- Upregulated miR-106a-5p and miR-106b-5p correlated with improved survival in both cancers.
- Inverse correlations were observed between several miRNAs and checkpoint genes, notably CD274 and PDCD1LG2.
Conclusions:
- A conserved set of miRNAs are dysregulated in GBM and CRC, correlating with patient survival and PD-1/PD-L1/PD-L2 expression.
- These miRNAs are potential regulators of the PD-1/PD-L1/PD-L2 axis.
- The identified miRNAs may serve as biomarkers for tumor biology and influence immune checkpoint signaling.
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