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Updated: Sep 2, 2026

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Intramolecular hydrogen bonding topology modulates fluorescence in C4N4 fluorophores
Miki Kohei1, Mao Niimura1, Ryosuke Tsutsumi1
1Graduate School of Pharmaceutical Sciences, Keio University, 1-5-30 Shibakoen, Minato-ku, Tokyo 105-8512, Japan. kumagai-ny@keio.jp.
Abstract:
Systematic comparison of hydroxy-, amino-, amide-, sulfonamide-, and phosphinamide-substituted C4N4 fluorophores revealed that fluorescence is modulated not simply by hydrogen-bond donor strength, but by positional, geometrical, and conformational accessibility of intramolecular hydrogen bonding to the pyrimidine core. This insight was translated into an acetylation-responsive turn-on probe, providing a design basis for responsive C4N4 fluorophores.
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