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Updated: Oct 7, 2026

Biochemical Assays for Analyzing Activities of ATP-dependent Chromatin Remodeling Enzymes
Published on: October 25, 2014
Panta rhei: Chromatin remodeling dynamics
Asgar Abbas Kazrani1, Franck Martin1, Julie Lafouge1
1Department of Functional Genomics and Cancer & Department of Integrated Structural Biology, Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), Illkirch Cedex, France; Université de Strasbourg, Strasbourg, France; Centre National de la Recherche Scientifique UMR 7104, Illkirch Cedex, France; Institut National de la Santé et de la Recherche Médicale U1258, Illkirch Cedex, France.
Abstract:
Chromatin remodeling governs how eukaryotic genomes are accessed and interpreted by dynamically modulating nucleosome architecture. Adenosine triphosphate (ATP)-dependent remodeling complexes are highly conserved molecular machines built around Snf2-family ATPases that use the energy of ATP hydrolysis to slide, evict, or restructure nucleosomes, thereby shaping transcription, replication, and DNA repair. Their importance is such that their malfunctioning is linked to different diseases, including cancer. Recent discoveries reveal that chromatin remodelers are far more dynamic than previously appreciated: they undergo continual motion, rapid exchange, and transient nucleosome engagement, underscoring a highly fluid regulatory landscape. To capture this emerging view, we invoke Heraclitus' aphorism panta rhei (ancient Greek: πάντα ῥεῖ, 'everything flows, moves'), which aptly reflects the intrinsic dynamism of remodeling processes. Advances in single-molecule imaging and high-resolution structural approaches now illuminate how remodelers search the genome, transition between functional states, and remodel nucleosomes in real time. This review synthesizes recent developments, with emphasis on SWItch/Sucrose Non-Fermentable (SWI/SNF) complexes and comparative insights across remodeler families, highlighting how integrating structural, biochemical, and biophysical perspectives is reshaping current models of chromatin regulation.
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