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Updated: Oct 25, 2026

Evidence-based Knowledge Synthesis and Hypothesis Validation: Navigating Biomedical Knowledge Bases via Explainable AI and Agentic Systems
Published on: June 13, 2025
Lightweight open-source reasoning large language model for evidence synthesis screening
David M Dávila-García1, Amanda Gilbert2, Adam B Wilcox1
1Institute for Informatics, Data Science & Biostatistics, Washington University School of Medicine in St. Louis, St. Louis, MO 63110, United States.
Objectives:
To evaluate performance and efficiency of a lightweight open-source reasoning large language model (LLM) against an expert-derived reference standard for screening scientific publication databases.
Materials And Methods:
Two expert reviewers screened subsets of database records across 3 stages: (1) base eligibility (n = 200), (2) obesity focus (n = 200), and (3) women of reproductive age focus (n = 150). The LLM (gpt-oss-20b) screened all records (n = 20 118). Performance (F1-score and sensitivity [recall]) and efficiency (average screening rate) were assessed.
Results:
Interreader agreement was near-perfect ( : 0.99-1.00; all P < .001). LLM performance was high: F1-score, 0.83-0.94; sensitivity, 90%-95%; specificity, 86%-99%; accuracy, 89%-94%; precision, 77%-99%; and negative predictive value (NPV), 89%-96%. LLM screening was faster than reviewers (19.4 vs ∼1.0 records/min).
Discussion:
The LLM achieved high performance and efficiency relative to an expert-derived reference standard for screening.
Conclusion:
The use of lightweight open-source reasoning LLMs shows promise to support screening in evidence synthesis workflows.
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