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Updated: Oct 26, 2026

Mass Spectrometry-Guided Genome Mining as a Tool to Uncover Novel Natural Products
Published on: March 12, 2020
FBMN-Guided Discovery of Cyanogrisides from Mutant Strain CRM005 and Structural Diversification
Yukang Gao1, Yun Luo1, Qingyun Wen1
1Key Laboratory of Marine Drugs, Ministry of Education of China, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, China.
Abstract:
Through genome mining and metabolomic analysis of the mutant strain CRM005, combined with feature-based molecular networking (FBMN) deduplication, five novel natural cyanogrisides (1-5) were selectively isolated and characterized, alongside six previously reported analogs (6-11). Antiproliferative assays demonstrated that cyanogriside K (8) exhibited potent and selective cytotoxicity against HCT-116 cells, with an IC50 value of 0.70 μM. In an effort to maximize the reutilization of natural product resources, the major aglycone caerulomycin H (11) was utilized to develop a glycosylation system, affording a small panel of nine glycosylated derivatives (13-21). Subsequent antiproliferative evaluations facilitated a preliminary structure-activity relationship analysis focused on variations in the glycosyl groups. Notably, the synthetic compound 13 displayed submicromolar-level activity against the human glioblastoma cell line SF-126 (IC50 0.49 μM), surpassing the activity of doxorubicin (IC50 0.78 μM). These findings position compound 13 as a promising cytotoxic hit derived from a small semisynthetic library and offer preliminary insight into how glycosyl modification impacts antiproliferative activity.
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