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An Oligonucleotide-based Tandem RNA Isolation Procedure to Recover Eukaryotic mRNA-Protein Complexes
Published on: August 18, 2018
The complete sequence of a full length cDNA for human liver glyceraldehyde-3-phosphate dehydrogenase: evidence for
Abstract:
A recombinant M13 clone (O42) containing a 65 b.p. cDNA fragment from human fetal liver mRNA coding for glyceraldehyde-3-phosphate dehydrogenase has been identified and it has been used to isolate from a full-length human adult liver cDNA library a recombinant clone, pG1, which has been subcloned in M13 phage and completely sequenced with the chain terminator method. Besides the coding region of 1008 b.p., the cDNA sequence includes 60 nucleotides at the 5'-end and 204 nucleotides at the 3'-end up to the polyA tail. Hybridization of pG1 to human liver total RNA shows only one band about the size of pG1 cDNA. A much stronger hybridization signal was observed using RNA derived from human hepatocarcinoma and kidney carcinoma cell lines. Sequence homology between clone 042 and the homologous region of clone pG1 is 86%. On the other hand, homology among the translated sequences and the known human muscle protein sequence ranges between 77 and 90%; these data demonstrate the existence of more than one gene coding for G3PD. Southern blot of human DNA, digested with several restriction enzymes, also indicate that several homologous sequences are present in the human genome.
Insights
Researchers identified a glyceraldehyde-3-phosphate dehydrogenase (G3PD) gene clone (pG1) from human liver cDNA. This clone showed higher expression in cancer cell lines, suggesting G3PD
Area of Science:
- Molecular Biology
- Human Genetics
- Biochemistry
Background:
- Glyceraldehyde-3-phosphate dehydrogenase (G3PD) is a key enzyme in glycolysis.
- Understanding G3PD gene expression is crucial for cellular metabolism research.
- Previous studies suggested potential variations in G3PD genes.
Purpose of the Study:
- To isolate and sequence a full-length human G3PD cDNA clone.
- To investigate the expression patterns of G3PD in different human tissues and cell lines.
- To explore the genetic basis and potential multiplicity of human G3PD genes.
Main Methods:
- Isolation of a human fetal liver cDNA fragment (clone O42).
- Screening of a human adult liver cDNA library to obtain a full-length clone (pG1).
- Complete sequencing of clone pG1 using the chain termination method.
- RNA hybridization (Northern blot) to analyze G3PD expression.
- DNA Southern blot analysis to assess G3PD gene copy number.
Main Results:
- A 1008 bp coding region and flanking sequences of human G3PD cDNA (clone pG1) were sequenced.
- Clone pG1 hybridized to a single band in human liver RNA, but showed stronger signals in hepatocarcinoma and kidney carcinoma cell lines.
- Sequence homology analysis indicated the existence of multiple G3PD genes in the human genome.
- Southern blot analysis confirmed the presence of several homologous G3PD sequences in human DNA.
Conclusions:
- The study successfully isolated and sequenced a full-length human G3PD cDNA.
- Differential expression of G3PD was observed, with higher levels in certain cancer cell lines.
- Evidence strongly suggests the presence of multiple G3PD genes in the human genome.
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