DNA interaction and nucleotide sequence cleavage of copper-streptonigrin

The copper-accelerated DNA binding and cleavage of streptonigrin have been investigated by 1H-NMR, ESR spectrometry and nucleotide sequence analysis. In the DNA breakage by the streptonigrin-Cu(II)-NADPH system, the somewhat preferred cleavage sites were several cytosine bases adjacent to purine bases such as GCGG(5'----3'), ACGC(5'----3') and GGCG(5'----3') sequences. The proton chemical shifts for the streptonigrin-Cu(I)-poly(dA-dT) complex demonstrated the interaction between the pyridine ring of the drug and the purine bases of the nucleic acid. Indeed, the temperature profile of adenine H-2 proton clearly showed the Tm to shift from 70 degrees C in the binary streptonigrin-poly(dA-dT) system to 75 degrees C in the ternary streptonigrin-Cu(I)-poly(dA-dT) system. The interaction of the streptonigrin-Cu(II) complex with DNA also induced the apparent change of ESR parameters. The tricyclic phenanthidium ring system including the copper chelate ring appears to significantly contribute to the present DNA interaction and cleavage of copper-streptonigrin.