Effects of model misspecification in the estimation of variance components and intraclass correlation for paired data

Paired data occur in many experimental situations. When one views the subjects as a random sample from some large population, it may seem reasonable to model the data according to the typical one-way random effects analysis of variance (ANOVA). It is then usually of interest to estimate variance components and intraclass correlation. These estimators can be biased if key assumptions are violated, leading to erroneous interpretations and conclusions. We focus upon assumptions about the equality or inequality of means and/or variances of the two measures on each subject. In the framework of the one-way random effects ANOVA model, and three generalizations of it, we document estimators obtained as solutions to the likelihood equations. We consider the potentially serious effects of mistaken assumptions. Our findings suggest that the most general model considered is most desirable if consistent and efficient estimation of the between-subject variance component and intraclass correlation is the main goal. We also briefly connect our exposition to the study of reliability or agreement.