Related Experiment Video
Updated: Aug 8, 2026

Visualization of UV-induced Replication Intermediates in E. coli using Two-dimensional Agarose-gel Analysis
Published on: December 21, 2010
Two early replicated, developmentally controlled genes of Physarum display different patterns of DNA replication by
1Department of Biology, Texas A&M University, College Station 77843.
Abstract:
The nature of replication origins in eukaryotic chromosomes has been examined in some detail only in yeast, Drosophila, and mammalian cells. We have used highly synchronous cultures of plasmodia of the myxomycete Physarum and two-dimensional agarose gel electrophoresis to examine replication of two developmentally controlled, early replicated genes over time in S-phase. A single, discrete origin of replication was found within 4.8 kb of the LAV1-5 gene, which encodes a homolog of profilin. In contrast, the LAV1-2 gene appears to be surrounded by several origins. Two origins were identified within a 15 kb chromosomal domain and appear to be inefficiently used. Replication forks collide at preferred sites within this domain. These terminating structures are long lived, persisting for at least 2 h of the 3 h S-phase. Analysis of restriction fragment length polymorphisms (RFLPs) within the LAV1-2 domain indicates that replication of alleles on different parental chromosomes is a highly coordinated process. Our studies of the these two early replicated, plasmodium-specific genes indicate that both a fixed, narrow origin region and a broader zone containing two closely spaced origins of DNA replication occur in Physarum.
Insights
Physarum DNA replication origins vary. One gene has a single origin, while another has multiple, inefficient origins where replication forks meet and persist. This reveals diverse replication strategies in eukaryotes.
Area of Science:
- Molecular Biology
- Genetics
- Cell Biology
Background:
- Eukaryotic replication origin characterization is limited to select model organisms.
- Understanding DNA replication origins is crucial for comprehending genome stability and inheritance.
Purpose of the Study:
- To investigate the nature and usage of replication origins in the myxomycete Physarum.
- To analyze the replication patterns of two developmentally regulated, early-replicating genes.
Main Methods:
- Utilized highly synchronous Physarum plasmodia cultures.
- Employed two-dimensional agarose gel electrophoresis for replication analysis.
- Analyzed restriction fragment length polymorphisms (RFLPs) for allelic coordination.
Main Results:
- Identified a single, discrete replication origin near the LAV1-5 gene.
- Discovered multiple, inefficient origins within a 15 kb domain of the LAV1-2 gene.
- Observed persistent replication fork collision structures within the LAV1-2 domain.
Conclusions:
- Physarum exhibits diverse DNA replication origin strategies, including both fixed narrow origins and broader zones with multiple origins.
- Replication of alleles on different parental chromosomes is highly coordinated.
- The findings contribute to the understanding of eukaryotic DNA replication mechanisms.
More Related Videos
08:53Strand-Specific Analysis of Proteins at Replicating DNA Strands by Enrichment and Sequencing of Protein-Associated Nascent DNA Method
Published on: May 2, 2025
05:22Electrophoretic Analysis of Replication Through Structure-Prone DNA Repeats Within the SV40-Based Human Episome
Published on: September 13, 2024
Related Concept Videos
Replication in Prokaryotes
Replication in Eukaryotes
Polytene Chromosomes
DNA Agarose Gel Electrophoresis
Gel extraction follows five major steps: running gel electrophoresis to separate fragments, isolating the individual bands, extracting DNA from those bands, and removing the dye and salts from the extracted mixture to obtain pure DNA.
In cloning experiments, both the insert and vector DNA...
S-Cdk Initiates DNA Replication
Two states at the origin of replication
In eukaryotes, the initiation of replication occurs at many sites on the chromosomes, called the origins of replication.
Replication in Eukaryotes
Many Proteins Orchestrate Replication at the Origin
Eukaryotic replication follows many of the same...