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Bacterial Artificial Chromosomes: A Functional Genomics Tool for the Study of Positive-strand RNA Viruses
Published on: December 29, 2015
Fine mapping and DNA sequence of replication functions of Bacillus thuringiensis plasmid pTX14-3
1Department of Microbiology, Technical University of Denmark, Lyngby-Copenhagen.
Abstract:
pTX14-3 is a 7.5-kb cryptic plasmid isolated from a Bacillus thuringiensis subspecies israelensis strain. Like many other small plasmids in gram-positive bacteria, pTX14-3 replicates via a single-stranded DNA intermediate. The nucleotide sequence of the replication region was determined and an open reading frame of 636 base pairs encoding a protein necessary for plasmid replication was identified by deletion analysis. No significant homology was found between this open reading frame and those encoding replication proteins identified on other plasmids isolated from gram-positive bacteria, nor could we find any homology to plus origins from other single-stranded DNA plasmids. Consequently, it seems that the replicon of pTX14-3 belongs to a new family of replicons in the group of single-stranded DNA plasmids. The sequence of the single-strand origin (i.e., the minus origin) responsible for the conversion of single-stranded plasmid DNA to double-stranded plasmid DNA was also determined. A partial homology between the minus origin of pTX14-3 and the Bacillus subtilis plasmid pBAA1 was identified. A previously identified locus that suppresses formation of high molecular weight multimers was also minimized and sequenced.
Insights
Researchers identified a novel plasmid replication mechanism in Bacillus thuringiensis. The pTX14-3 plasmid
Area of Science:
- Microbiology
- Molecular Biology
- Genetics
Background:
- Bacillus thuringiensis subspecies israelensis harbors cryptic plasmids, such as pTX14-3.
- Small plasmids in gram-positive bacteria often replicate using single-stranded DNA intermediates.
Purpose of the Study:
- To characterize the replication region of the pTX14-3 plasmid.
- To identify and analyze the protein essential for pTX14-3 replication.
- To investigate the single-strand origin (minus origin) of pTX14-3.
Main Methods:
- Nucleotide sequencing of the replication region.
- Deletion analysis to identify the replication protein.
- Sequence comparison with known plasmid replicons and origins.
Main Results:
- An open reading frame encoding a 636 bp replication protein was identified.
- The pTX14-3 replication protein showed no homology to known replication proteins or plus origins.
- The single-strand origin (minus origin) sequence was determined, showing partial homology to Bacillus subtilis plasmid pBAA1.
- A locus suppressing multimer formation was minimized and sequenced.
Conclusions:
- The pTX14-3 replicon represents a new family of single-stranded DNA plasmid replicons.
- The identified replication protein and origin sequences offer insights into plasmid replication diversity.
- Understanding pTX14-3 replication may aid in developing new genetic tools for Bacillus species.
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