Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

Search the Human cDNA Database at TIGR

L Cocea1

  • 1Laboratoire de Développement du Système Immunitaire, Faculté de Médecine Necker-Enfants malades, Université Descartes, Paris, France. cocea@infobiogen.fr

Computer Applications in the Biosciences : CABIOS
|April 1, 1997
PubMed
Summary

The HCDSearch system streamlines access to the Human cDNA Database (HCD) by automating query submission and result processing. This tool enhances efficiency for researchers accessing human expressed DNA sequences.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Assessment and reporting of the clinical immunogenicity of therapeutic proteins and peptides-harmonized terminology and tactical recommendations.

The AAPS journal·2014
Same author

Two novel human and mouse DNA polymerases of the polX family.

Nucleic acids research·2000
Same author

A targeted deletion of a region upstream from the Jkappa cluster impairs kappa chain rearrangement in cis in mice and in the 103/bcl2 cell line.

The Journal of experimental medicine·1999
Same author

Negative regulation of Ig gene rearrangement by a 150-bp transcriptional silencer.

European journal of immunology·1998
Same author

Duplication of a region in the multiple cloning site of a plasmid vector to enhance cloning-mediated addition of restriction sites to a DNA fragment.

BioTechniques·1998
Same author

Vitamin E does not prevent exercise-induced increase in pulmonary clearance.

Journal of applied physiology (Bethesda, Md. : 1985)·1994

Area of Science:

  • Genomics
  • Bioinformatics

Background:

  • The Human cDNA Database (HCD) at TIGR offers a comprehensive collection of human expressed DNA sequences.
  • Current HCD retrieval methods involve manual, time-consuming query composition and result processing.

Purpose of the Study:

  • To develop an automated system for querying and processing data from the Human cDNA Database.
  • To improve the efficiency of accessing and analyzing human expressed DNA sequences.

Main Methods:

  • The HCDSearch system automates query creation and submission via email using text file inputs.
  • It processes and formats query results, including HCD numbers and library identifiers, for easier examination.
  • The system is designed to run on Unix platforms.

Main Results:

  • Automated query composition and email submission to HCD.
  • Accelerated processing of search results.
  • Generation of easily interpretable lists of HCD numbers and library identifiers.

Conclusions:

  • HCDSearch significantly reduces the time and effort required for HCD data retrieval and analysis.
  • The system offers a more efficient workflow for researchers utilizing the Human cDNA Database.

Related Experiment Videos