Related Experiment Video
Updated: Aug 7, 2026

11:04
A Cell Free Assay to Study Chromatin Decondensation at the End of Mitosis
Published on: December 19, 2015
Chromatin assembly in a yeast whole-cell extract
M C Schultz1, D J Hockman, T A Harkness
1Department of Biochemistry, University of Alberta, Edmonton, AB, Canada T6G 2H7. michael.schultz@ualberta.ca
Summary
Researchers developed an in vitro system for chromatin assembly in yeast. This system revealed sequential histone recruitment and the role of DNA ligase I in template repair during nucleosome formation.
Area of Science:
- Molecular Biology
- Genetics
- Biochemistry
Background:
- Chromatin assembly is a fundamental biological process.
- Understanding the mechanisms of nucleosome formation is crucial for studying DNA replication and repair.
Purpose of the Study:
- To develop a novel in vitro system for studying chromatin assembly in Saccharomyces cerevisiae.
- To elucidate the pathway of histone recruitment during nucleosome formation.
- To investigate the role of DNA ligase I in chromatin assembly.
Main Methods:
- Development of an ATP-dependent in vitro system using soluble histones and assembly factors.
- Combined biochemical and genetic approaches in yeast.
- Analysis of histone recruitment pathways.
- Investigating the function of DNA ligase I.
Main Results:
- The system generates physiologically spaced nucleosomes.
- Evidence supports a sequential model for histone H3/H4 tetramer and H2A/H2B dimer recruitment.
- DNA ligase I plays a significant role in template repair during assembly.
Conclusions:
- The developed in vitro system is effective for analyzing chromatin assembly.
- The findings provide insights into the step-wise process of nucleosome formation.
- This system facilitates integrated biochemical and genetic studies of chromatin dynamics.
Related Concept Videos
Yeast Signaling
Yeasts are single-celled organisms, but unlike bacteria, they are eukaryotes (cells with a nucleus). Cell signaling in yeast is similar to signaling in other eukaryotic cells. A ligand, such as a protein or a small molecule released from a yeast cell, attaches to a receptor on the cell surface. The binding stimulates second-messenger kinases to activate or inactivate transcription factors that further regulate gene expression. Many of the yeast intracellular signaling cascades have similar...
Euchromatin
The extent of chromatin compaction can be studied by staining chromatin using specific DNA binding dyes. Under the microscope, the dense-compacted regions take up more dye, appearing darker, while the less-compact areas take up less dye and appear lighter. Based on the compaction level, chromatins are classified into two primary forms – euchromatin and heterochromatin.
Euchromatin is the less dense region of the chromatin and stains lighter. Euchromatin contains histone H3 extensively...
Euchromatin is the less dense region of the chromatin and stains lighter. Euchromatin contains histone H3 extensively...
Chromatin Packaging
Each human somatic cell contains 6 billion base pairs of DNA. Each base pair is 0.34 nm long, meaning each diploid cell contains a staggering 2 meters of DNA. This long DNA strand is packed inside a nucleus measuring only 10-20 microns in diameter with the help of specialized DNA-binding proteins called histones. Together they form a compact DNA-protein complex called chromatin. The chromatin is further compacted into higher-order structures. The highest level of compaction is achieved during...

