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A Metadata Extraction Approach for Clinical Case Reports to Enable Advanced Understanding of Biomedical Concepts
Published on: September 20, 2018
Standardized problem list generation, utilizing the Mayo canonical vocabulary embedded within the Unified Medical
P L Elkin1, D N Mohr, M S Tuttle
1Department of Area Internal Medicine, Mayo Clinic, Rochester, MN, USA.
Clinicians successfully used a new system for standardized problem entry, finding diagnoses and acceptable response times in over 90% of scenarios. They value standardized medical vocabularies for research and practice.
Area of Science:
- Medical Informatics
- Clinical Terminology
- Health Information Systems
Background:
- The Mayo problem list vocabulary is a clinically derived lexicon developed from Mayo Clinic's Master Sheet Index and problem list entries.
- The vocabulary was refined by removing redundancies, including lexical variants, spelling errors, and administrative qualifiers.
- Qualifiers are dynamically re-coordinated with terms to enhance the system's recognition of input strings.
Purpose of the Study:
- To assess the viability of a standardized problem entry mechanism through a usability trial.
- To evaluate clinician satisfaction with the system's performance, including diagnosis retrieval and response time.
- To gather feedback on desired system features for improved user experience.
Main Methods:
- The Problem Manager system was implemented using Windows tools and Object Pascal, communicating with a UNIX-based vocabulary server via HTTP.
- A usability trial involved eight clinicians performing eleven scenarios to assess system performance.
- Clinician responses were observed, videotaped, and tabulated to analyze satisfaction and system effectiveness.
Main Results:
- Clinicians successfully found acceptable diagnoses in 91.1% of scenarios.
- The system's response time was acceptable in 92.5% of scenarios.
- Seven out of eight participants found the presentation of related terms useful; all desired shortcuts like abbreviations and word completion.
Conclusions:
- Clinicians are amenable to selecting canonical terms from suggested lists rather than using their own wording.
- There is a demand for "intelligent" systems that suggest terms within categories, such as types of "Migraine".
- The system is functionally usable in its current development stage, and clinicians recognize the value of standardized problem encoding for research, education, and practice.
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