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HuGeMap: a distributed and integrated Human Genome Map database

E Barillot1, F Guyon, C Cussat-Blanc

  • 1GIS Infobiogen, 7 rue Guy Môquet, BP 8, 94801 Villejuif Cedex, France and Sysra Informatique, 7 rue de Bièvres, 92140 Clamart, France. emmanuel.barillot@infobiogen.fr

Nucleic Acids Research
|February 21, 1998
PubMed
Summary
This summary is machine-generated.

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The HuGeMap database integrates human genome genetic and physical maps, offering interconnected access. This resource facilitates comprehensive genomic research through web and programming interfaces.

Area of Science:

  • Genomics
  • Bioinformatics
  • Human Genetics

Background:

  • Genetic and physical mapping are crucial for understanding genome organization and function.
  • Existing genome databases often lack comprehensive integration and standardized data distribution.
  • The need for interconnected, accessible resources for human genome research is significant.

Purpose of the Study:

  • To introduce the HuGeMap database, a centralized repository for human genome mapping data.
  • To establish interconnectedness between HuGeMap and other relevant databases, such as RHdb.
  • To provide accessible platforms for interactive browsing and programmatic data retrieval.

Main Methods:

  • Development of the HuGeMap database to store genetic and physical maps of the human genome.

Related Experiment Videos

  • Integration with the radiation hybrid mapping database (RHdb).
  • Implementation of a web server for interactive browsing and a CORBA server for programmatic access.
  • Utilization of a Java applet for map visualization and comparison, querying both HuGeMap and RHdb.

    • Main Results:

    • HuGeMap successfully integrates major genetic and physical maps of the human genome.
    • Interconnectivity with RHdb is established, enhancing data accessibility.
    • Web and CORBA servers provide versatile access methods for researchers.
    • A Java applet enables interactive display and comparison of genome maps.

    Conclusions:

    • HuGeMap serves as a valuable, interconnected resource for human genome mapping data.
    • The database promotes open and standardized distribution of genomic objects worldwide.
    • Enhanced accessibility through web and programming interfaces supports diverse research needs.