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Parallel pattern search energy minimization
1Department of Chemistry, University of Glasgow, Scotland.
Journal of Molecular Graphics & Modelling
|June 1, 1997
Summary
This study adapted a pattern search algorithm for molecular structure optimization to run on parallel computers. The parallel version shows efficiency and comparable convergence to the original sequential method.
Area of Science:
- Computational chemistry
- Parallel computing
- Algorithm optimization
Background:
- Molecular structure optimization is crucial in computational chemistry.
- Traditional algorithms can be computationally intensive.
- Parallel computing offers potential for accelerating these tasks.
Purpose of the Study:
- To adapt a pattern search algorithm for parallel computation.
- To evaluate the efficiency and convergence of the parallel algorithm.
- To demonstrate parallelization strategies for stochastic procedures.
Main Methods:
- Implementation of a pattern search algorithm on a parallel computer.
- Analysis of parallel efficiency using speedup metrics.
- Comparison of convergence rates between parallel and sequential algorithms.
Main Results:
- The adapted algorithm achieves significant parallel efficiency (speedup).
- The parallel implementation maintains a comparable rate of convergence to the sequential version.
- The study successfully parallelized a previously nonparallelizable stochastic procedure.
Conclusions:
- Parallel computing is effective for optimizing molecular structures using pattern search algorithms.
- Algorithm rearrangement can enable parallelization of inherently sequential processes.
- This work provides a framework for accelerating computational chemistry tasks through parallelization.