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Interaction potentials for protein folding
F Seno1, A Maritan, J R Banavar
1Istituto Nazionale per la Fisica della Materia, Dipartimento di Fisica G. Galilei, Università di Padova, Italy. seno@mvxpd5.pd.infn.it
Proteins
|March 28, 1998
Abstract:
We outline a general strategy for determining the effective coarse-grained interactions between the amino acids of a protein from the experimentally derived native-state structures. The method is, in principle, free from any adjustable or empirically determined parameters, and it is tested on simple models and compared with other existing approaches.