The ATP-dependent PIM1 protease is required for the expression of intron-containing genes in mitochondria

L van Dyck1, W Neupert, T Langer

  • 1Institut für Physiologische Chemie der Universität München, 80336 München, Germany. Langer@bio.med.uni-muenchen.de

Genes & Development
|May 29, 1998
PubMed

Insights

The PIM1 protease is crucial for yeast mitochondrial DNA (mtDNA) integrity and gene expression. Lacking PIM1 protease impairs mtDNA stability, protein synthesis, and transcript processing, affecting cellular respiration.

Area of Science:

  • Mitochondrial biology
  • Molecular genetics
  • Protease function

Background:

  • The ATP-dependent PIM1 protease, a Lon-like protease in the mitochondrial matrix, is vital for yeast mitochondrial genome integrity.
  • Yeast cells deficient in PIM1 accumulate mitochondrial DNA (mtDNA) lesions, leading to loss of respiratory function.

Purpose of the Study:

  • To investigate novel functions of the PIM1 protease in mitochondrial biogenesis and gene expression.
  • To understand the role of PIM1 in stabilizing mtDNA and regulating the synthesis of mitochondrially encoded proteins.

Main Methods:

  • Utilized a multicopy suppressor to stabilize mtDNA in PIM1-deficient yeast mutants.
  • Analyzed the synthesis of cytochrome c oxidase subunit I (CoxI) and cytochrome b (Cob).
  • Examined mRNA splicing and transcript stability for COXI and COB genes.

Main Results:

  • Impaired synthesis of CoxI and Cob in pim1 mutants with mtDNA.
  • PIM1-mediated proteolysis is essential for mature COXI mRNA translation.
  • Deficiencies in COXI and COB transcript splicing and degradation of multi-intron transcripts were observed in pim1 mutants.

Conclusions:

  • PIM1 protease plays multiple essential roles in mitochondrial gene expression, including mtDNA maintenance, mRNA translation, and transcript processing.
  • These functions are critical for maintaining mitochondrial function and cellular respiration in yeast.

Related Concept Videos

The Inner Mitochondrial Membrane01:28

The Inner Mitochondrial Membrane

The inner mitochondrial membrane is the primary site of ATP synthesis. The inner membrane domain that forms a smooth layer adjacent to the outer membrane is called the inner boundary membrane. This domain contains membrane transporters that drive metabolites in and out of the mitochondria.  In contrast, the inner membrane network that invaginates into the matrix space is called the cristae membrane. This domain accounts for principle mitochondrial function as it accommodates the protein...
Mitochondrial Protein Sorting01:39

Mitochondrial Protein Sorting

Mitochondria are double-membrane organelles of the eukaryotes involved in cellular metabolism, signaling, ATP synthesis, and programmed cell death.  Each of these processes requires specific proteins and enzymes that must be correctly sorted to the right mitochondrial subcompartment for the proper functioning of the organelle.
Most of these mitochondrial proteins are encoded by the nucleus and imported to the mitochondria as unfolded or loosely folded precursors. Mitochondrial precursors...
Mitochondrial Precursor Proteins01:39

Mitochondrial Precursor Proteins

Mitochondrial precursors are partially unfolded or loosely folded polypeptide chains. Newly synthesized precursors are inhibited from spontaneously folding into their native conformation by the cytosolic chaperones, heat shock proteins 70 (Hsp70), and mitochondrial import stimulation factors (MSFs). Precursors bound to MSFs are guided to the TOM70-TOM37 receptors, while precursors bound to Hsp70  chaperones are targetted to TOM20-TOM22 receptor complexes.
Most of the mitochondrial precursors...
Translocation of Proteins into the Mitochondria01:19

Translocation of Proteins into the Mitochondria

Mitochondrial precursors are translocated to the internal subcompartments via independent mechanisms involving distinct protein machineries called translocases.
Sorting of outer membrane proteins:
Mitochondrial outer membrane proteins are of two types: the transmembrane, beta-barrel porins, and the membrane-anchored, alpha-helical proteins. Beta-barrel porin precursors are translocated by the TOM complex and inserted into the outer mitochondrial membrane by the SAM complex. In contrast,...
Energy to Drive Translocation01:37

Energy to Drive Translocation

Mitochondrial protein import is powered by two distinct energy sources: ATP hydrolysis and electrochemical potential across the inner membrane. Newly synthesized precursors are bound by cytosolic chaperones of the Hsp70 family, which guide them to the import receptors on the mitochondrial surface. Utilizing the energy of ATP hydrolysis, Hsp70 chaperones transfer these precursors to the TOM receptors on the mitochondrial outer membrane.
Generally, polypeptides are unfolded by two distinct...
Protein Transport into the Inner Mitochondrial Membrane01:34

Protein Transport into the Inner Mitochondrial Membrane

Nuclear encoded mitochondrial precursors are imported to the inner membrane in a multistep process involving two separate translocons, TIM22 and TIM23. TIM23 is a cation-selective pore that remains closed by the N terminal segment of the protein. Negative charges on the TIM23 act as a receptor for the incoming precursor, pulling the positively charged matrix-targeting sequence for peptide insertion and translocation.
Transport of mitochondrial precursors across the TIM23 channel is driven by...