Jove
Visualize
Contact Us

Related Experiment Videos

JavaShade: multiple sequence alignment box-and-shading on the World Wide Web

M R Southern1, A P Lewis

  • 1Bioinformatics, Research Information Systems, GlaxoWellcome Medicines Research Centre, Stevenage, Herts SG1 2NY, UK.

Bioinformatics (Oxford, England)
|January 27, 1999
PubMed
Summary

JavaShade is a multiple sequence alignment tool that generates high-quality printed output. It offers versatile boxing and shading methods to highlight meaningful positions in alignments.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Specificity of human anti-variable heavy (VH ) chain autoantibodies and impact on the design and clinical testing of a VH domain antibody antagonist of tumour necrosis factor-α receptor 1.

Clinical and experimental immunology·2015
Same author

BioAssay Research Database (BARD): chemical biology and probe-development enabled by structured metadata and result types.

Nucleic acids research·2014
Same author

The Deuterator: software for the determination of backbone amide deuterium levels from H/D exchange MS data.

BMC bioinformatics·2007
Same author

Influenza circulating strains in Argentina exhibit differential induction of cytotoxicity and caspase-3 in vitro.

Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology·2004
Same author

Proteomics characterization of abundant Golgi membrane proteins.

The Journal of biological chemistry·2000
Same author

In vitro selection and characterisation of influenza B/Beijing/1/87 isolates with altered susceptibility to zanamivir.

Virology·1999
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Area of Science:

  • Bioinformatics
  • Computational Biology

Background:

  • JavaShade is a software tool for analyzing biological sequence data.
  • It is accessible via the World Wide Web.

Purpose of the Study:

  • To present JavaShade, a novel multiple sequence alignment visualization tool.
  • To provide users with flexible options for enhancing alignment clarity.

Main Methods:

  • The tool employs various boxing and shading techniques.
  • It is designed for generating high-quality printed output of sequence alignments.

Main Results:

  • JavaShade facilitates the selection of optimal display parameters.
  • It effectively highlights the most significant positions within multiple sequence alignments.

Related Experiment Videos

Conclusions:

  • JavaShade offers a powerful and adaptable solution for visualizing multiple sequence alignments.
  • The tool aids researchers in interpreting complex sequence data through enhanced graphical representation.